activate() | PAtom | [inline] |
ApplyTransform(const Matrix4 &transform) | PAtom | |
changePosition(const Vector3 &newPosition) | PAtom | |
FindAnyCollision() const | PAtom | |
FindSelfCollision() const | PAtom | |
FindStaticCollision() const | PAtom | |
getAllCollidingEither() const | PAtom | |
getAllCollidingSelf() const | PAtom | |
getAllCollidingStatic() const | PAtom | |
getBond(PResidue *res, const string &id) | PAtom | |
getBonds() const | PAtom | [inline] |
getChain() const | PAtom | |
getColor() const | PAtom | [inline] |
getCovalentRadius() const | PAtom | [inline] |
getGridPos() const | PAtom | |
getID() const | PAtom | [inline] |
getName() const | PAtom | [inline] |
getOccupancy() const | PAtom | [inline] |
getParentBlock() | PAtom | [inline] |
getParentResidue() | PAtom | |
getPos() const | PAtom | [inline] |
getSpaceManager() const | PAtom | |
getTempFactor() const | PAtom | [inline] |
getVanDerWaalsRadius() const | PAtom | [inline] |
inactivate() | PAtom | [inline] |
InAnyCollision() const | PAtom | |
InSelfCollision() const | PAtom | |
InStaticCollision() const | PAtom | |
isActive() const | PAtom | [inline] |
isBonded(const PAtom *other) const | PAtom | |
isOnBackbone() const | PAtom | |
PAtom(PBlock *block, const string &name, Vector3 position, const string &id) | PAtom | |
PBlock class | PAtom | [friend] |
PBond class | PAtom | [friend] |
PResidue class | PAtom | [friend] |
revertColor() | PAtom | [inline] |
setColor(const GLColor setColor) | PAtom | [inline] |
setOccupancy(Real newVal) | PAtom | [inline] |
setTempFactor(Real newVal) | PAtom | [inline] |
shortestBondPath(const PAtom *a1, const PAtom *a2, int threshold=-1) | PAtom | [static] |
traverseAtoms(AtomFunctor *atomFn) | PAtom | [inline] |
traverseBonds(BondFunctor *bondFn) | PAtom | [inline] |
traverseChain(AtomFunctor *atomFn, BondFunctor *bondFn) | PAtom | |
WithinActiveBlock() const | PAtom | |
~PAtom() | PAtom |