collisionEnergy(const PAtom *a1, const PAtom *a2) | PEnergy | [static] |
DEFAULT_THRESHOLD | PEnergy | [static] |
energyOfChain(PChain *chain, EnergyCalcFn energyFn=vanDerWaalsEnergy, Real threshold=DEFAULT_THRESHOLD) | PEnergy | [static] |
vanDerWaalsEnergy(const PAtom *a1, const PAtom *a2) | PEnergy | [static] |