GENE NAME GWEIGHT Nutt03_Brain_NG_13 Garber01_161_96_Adeno Bhattacharjee01_SMCL-5937-A307-5 Iyer99_Serum_cyc_4_hours Iyer99_Serum_cyc_0 Bhattacharjee01_SMCL-SMCL9t1-A357-6 Ross01_HCC_1937 Golub99_ALL 1101 TA- ML Norel Pomeroy02_Brain_MD_54 Chen02_Liver_HBV_HK13 Whitfield02_2_hr_Hela_Double_Thymidine_exp3 Whitfield02_1_hr_Hela_Double_Thymidine_exp3 Iyer99_Serum_01 Whitfield02_4h_Thy_Noc_Exp4 Shipp02_DLBC38 Shipp02_DLBC33 Shipp02_DLBC13 Pomeroy02_Brain_MD_22 Ramaswamy01_Normal__Germinal_Center_GC3 Perou00_MCF7_NCI Ramaswamy01_Tumor__CNS_Medulloblastoma_M33 Nutt03_Brain_CG_12 Ramaswamy01_Tumor__Leukemia_ALL-T_ALL_ 92_571 _BM Pomeroy02_Brain_MD_14 Golub99_ALL_20185_B-cell Ramaswamy01_Normal__Germinal_Center_GC45 Lessnick02_Run1, Day 0 Golub99_ALL_17281_B-cell Golub99_ALL_5982_B-cell Chen02_HCC_HK6 Chen02_HCC_HCV_SF30 Chen02_HCC_HBV_HK64_T7 Chen02_HCC_HBV_HK14 Chen02_SNU449_cells Chen02_Hep3B_cells Chen02_SK_HEP_1_cells Chen02_SNU423_cells Chen02_SNU398_cells Chen02_Undifferentiated_Carcinoma_HK17 Armstrong01_AML_15 Armstrong01_AML_14 Staunton01_MELAN_UACC62 Shipp02_DLBC28 Chen02_Liver_HBV_CH2 Whitfield02_8_hr_Hela_Double_Thymidine_exp2 Chen02_Liver_HBV_HK9 Chen02_Liver_HBV_HK7 Chen02_Liver_HBV_HK28 Chen02_Liver_HBV_HK24 Garber01_314_99_normal Garber01_315_99_normal Garber01_219_97_normal Lessnick02_Run 2, Day 3 Lessnick02_Run 1, Day 4 Chen02_Liver_HBV_HK63 Chen02_Liver_HBV_HK67 Chen02_FNH_HK70 Detweiler01_E3_U937_wild_type_4h Garber01_232_97_node Garber01_59_96_SCC Chen02_HCC_HBV_HK33 Chen02_HCC_HK2 Chen02_HCC_HBV_HK66_T4 Chen02_HCC_HBV_HK66_T3 Whitfield02_6hr_Hela_Double_Thymidine Whitfield02_0_1hr_Hela_Double_Thymidine Iyer99_Serum_20 Iyer99_Serum_16 Iyer99_Serum_24 Iyer99_Serum_0 6924 TCEB3 - 1 -0.1 1.6 -0.2 -0.0040 1.2 -0.2 -1.5 -0.5 -1.3 0.7 1.2 1.0 0.3 0.3 0.6 0.4 0.2 -0.1 -1.0 -2.0 0.5 1.3 -3.2 1.1 1.0 -2.2 2.2 -3.7 0.0040 -0.9 0.4 1.3 -0.3 2.4 1.6 0.9 1.2 -2.1 0.7 -3.2 -3.2 0.7 -5.0 -0.5 -0.06 -0.01 0.4 -0.4 -1.8 1.6 2.2 1.4 -0.7 -0.7 1.1 1.4 -0.6 -0.9 -1.0 -1.3 -2.3 -1.5 -2.2 -1.8 -0.9 -1.0 0.07 -0.3 -0.3 0.4 10370 CITED2 - 1 -0.2 0.3 -2.1 0.4 1.1 0.3 1.1 1.4 1.4 2.0 1.4 1.0 0.3 0.1 0.5 -3.5 -1.4 -1.3 1.5 -0.4 2.2 -0.1 2.4 3.2 1.3 1.1 -1.4 -0.1 -0.1 -1.5 0.6 0.8 0.8 0.6 0.1 1.5 2.0 -0.2 -0.3 -6.5 -1.1 -3.0 -3.5 -0.1 -1.1 0.02 1.5 0.5 1.1 1.3 1.6 0.5 -0.05 0.4 0.06 -0.02 -1.6 -1.7 -1.6 -1.5 -1.5 -3.0 -1.0 -1.8 0.3 -0.02 -0.2 -0.09 -0.08 -0.2 4613 MYCN - 1 0.2 0.4 4.4 1.1 -0.1 -0.7 -1.1 0.7 -0.01 -0.05 -0.4 -0.1 -1.1 1.0 -1.7 0.2 -1.2 -0.5 -0.07 0.4 1.5 -0.5 1.1 0.9 2.3 -3.9 -3.9 -0.1 -0.01 0.8 -2.0 0.4 0.1 0.6 0.1 0.4 -1.7 -1.7 -1.0 -1.3 -1.1 -1.4 0.5 0.8 0.9 0.3 -0.7 -1.3 0.4 1.1 -0.05 0.1 0.1 0.2 641 BLM - 1 0.1 -0.8 0.1 1.5 -1.0 -2.1 -0.2 -0.5 0.2 0.2 -0.04 1.8 2.3 2.0 1.2 2.9 1.1 1.5 2.6 -0.2 -1.2 1.8 1.4 1.4 1.2 1.3 1.3 0.4 0.1 -1.0 -0.8 -1.0 2.6 -0.4 0.2 -2.4 -1.9 -1.7 -1.1 -0.1 0.2 0.9 2.0 -0.4 -0.2 -1.0 0.7 1.5 -2.1 -2.1 -0.2 -1.9 0.3 0.3 1.9 0.1 -0.2 -1.0 -0.7 -1.6 -0.1 -0.4 4175 MCM6 - 1 1.8 1.2 1.1 -0.4 -0.7 1.2 1.4 0.3 -0.04 -0.4 0.1 0.06 0.03 -0.2 1.3 1.4 1.0 1.6 1.8 2.0 1.4 1.3 1.6 1.3 0.4 1.0 1.0 0.2 0.07 0.9 0.7 1.8 1.6 2.2 2.1 1.8 1.4 3.2 1.2 -2.7 -2.9 -0.4 -1.4 -2.1 -0.7 -0.02 -0.4 -1.0 -1.0 -1.8 -1.0 -1.5 -1.2 -1.5 -0.7 -1.4 -1.0 -1.3 -0.4 0.3 -1.0 -0.1 -0.4 0.6 -1.0 -0.2 0.2 0.4 -0.08 -0.5 4172 MCM3 - 1 2.2 1.9 2.4 1.1 1.4 0.4 0.4 0.09 0.2 -0.1 0.1 0.7 1.9 1.2 1.7 1.6 1.5 0.5 1.4 1.0 1.3 0.3 1.0 1.5 1.2 0.7 1.2 1.1 1.8 2.2 2.2 2.5 1.5 1.6 2.0 1.2 -1.9 -3.8 -1.3 -1.2 -1.0 -1.0 -1.7 -1.7 -1.0 -1.0 -1.5 -1.3 -0.9 -1.2 -2.9 -1.0 0.1 -1.1 -2.4 -0.2 0.2 -0.6 -0.6 -0.2 0.1 -0.1 0.2 9401 RECQL4 - 1 2.9 1.7 1.3 0.9 1.7 0.2 0.4 0.3 0.2 0.3 -0.7 1.4 1.6 1.7 2.0 3.5 2.2 2.1 2.0 3.0 1.0 -0.4 -5.5 -0.1 -1.0 -1.1 -1.8 0.8 -0.01 -0.08 -1.1 -2.2 -0.7 -0.7 -1.8 -1.1 -0.5 -1.4 -0.1 0.2 1.4 -1.2 -1.3 -0.8 -0.6 0.4 1107 CHD3 - 1 0.3 -0.1 0.0090 0.1 -0.04 0.1 0.2 -0.04 -0.2 1.1 1.0 1.1 0.4 1.5 1.2 1.7 0.7 1.7 1.3 -0.4 -0.2 -1.1 -0.2 -0.3 -0.2 -0.2 -0.3 -1.1 -0.5 -0.4 -0.1 -0.3 -0.5 -0.6 -0.07 -1.7 -1.0 -1.1 -0.1 0.3 0.2 0.3 0.5 0.1 6773 STAT2 - 1 1.5 -1.0 0.8 0.3 0.1 -0.1 1.1 -0.06 -3.1 1.4 0.4 0.3 1663 DDX11 - 1 0.9 1.3 1.0 1.0 0.9 -0.6 0.6 -0.04 0.2 0.1 -0.2 1.1 1.5 0.6 -0.4 1.1 1.3 1.0 1.3 0.7 0.05 0.4 0.5 -0.1 -0.1 -0.1 1.0 1.7 1.0 0.6 1.1 1.2 1.3 1.6 1.9 0.6 0.3 0.09 -0.5 -1.2 -1.2 -1.4 -1.4 -0.5 -1.7 0.3 -1.8 -1.8 -1.6 -0.06 0.1 -0.1 -0.3 0.8 0.0010 -0.4 -0.4 -0.2 -0.1 -0.5 -0.7 -0.2 0.08 7517 XRCC3 - 1 1.3 0.2 -1.6 0.03 0.9 2.7 0.3 0.3 0.2 0.9 -0.2 2.0 1.7 0.6 1.9 3.0 1.2 1.9 1.9 4.3 1.4 0.1 -1.4 -2.9 -0.4 -1.4 0.05 -1.8 -1.1 -1.4 -1.6 -1.7 -0.1 -2.0 -1.9 -2.1 -0.2 0.4 -0.3 0.2 -0.8 -0.9 -1.2 -1.0 -0.7 -0.2 5888 RAD51 - 1 0.0 0.5 -0.4 -0.4 1.7 -0.03 -0.02 3.4 -0.1 -0.1 -0.1 -0.02 -0.2 -0.2 0.0 -0.2 -0.02 -0.03 -0.2 -0.3 -0.03 -0.03 0.4 2.0 1.3 1.7 2.0 2.5 2.4 2.1 2.3 1.4 -1.5 -1.5 2.6 -0.1 -3.3 -0.5 -2.4 -0.2 -1.1 -0.9 -1.4 -1.5 -6.2 -0.3 -0.3 -0.8 -0.5 -0.6 -1.3 1.0 0.9 -0.7 -1.3 -1.4 -0.7 0.3 0.2 1662 DDX10 - 1 -0.4 -0.4 -1.2 1.5 -0.2 1.9 2.2 -2.2 0.7 0.5 0.3 1.3 1.4 1.4 2.5 -0.3 0.1 1.6 1.3 -1.3 -6.3 -1.3 -1.3 -0.7 0.0010 2353 FOS - 1 0.4 2.9 2.4 3.1 1.4 0.7 2.1 1.9 1.0 1.4 -1.2 -0.9 -0.5 -1.2 -2.1 -2.7 -2.5 -3.5 -3.5 -1.1 2.1 0.6 0.5 0.6 0.8 1.6 0.5 1.5 0.5 1.7 2.2 -0.2 -0.9 -1.0 -2.6 -1.2 -1.1 0.0070 -0.6 -1.9 -1.7 -1.6 -1.4 -1.8 -1.6 3726 JUNB - 1 -3.4 0.03 -1.4 1.8 0.8 0.7 2.7 0.8 1.2 1.6 1.5 1.2 1.3 2.3 1.0 1.3 1.1 1.2 -0.01 0.5 1.1 0.4 -1.2 0.08 1.2 -0.9 -0.9 -1.3 -2.6 -0.6 0.4 0.5 -0.8 -1.1 0.9 -3.2 -1.7 -1.3 -1.1 0.2 0.2 -2.1 -2.3 0.6 1.0 0.9 1.3 1.5 1.6 0.8 0.6 -0.2 -0.06 0.01 1.0 0.8 0.1 -0.8 -1.2 -1.7 -1.2 -2.7 -0.06 -0.4 -1.2 -1.8 -1.3 -1.2 -1.5 -1.3 7486 WRN - 1 -0.04 0.1 -0.6 -0.3 -0.1 -0.6 -0.1 1.1 0.09 0.03 -0.3 0.1 -0.2 1.0 0.1 -0.04 -0.3 0.6 0.5 -4.6 1.7 -0.1 -1.7 1.1 0.4 -4.6 -0.06 -1.8 0.1 -0.5 -0.1 0.1 0.1 -0.7 -0.6 -1.1 -0.9 0.1 0.4 0.1 1.0 -1.5 0.02 0.2 -0.4 0.2 -0.1 -0.2 -0.2 0.1 0.2 0.09 0.1 0.04 9931 HELZ - 1 0.2 0.3 -0.1 0.1 0.4 0.2 -0.1 0.6 1.7 0.8 0.2 -0.1 0.3 0.2 1.1 1.1 1.3 1.3 1.2 0.2 1.2 1.4 2.3 1.6 2.2 -0.0070 0.06 1.4 1.6 0.2 0.7 0.2 0.3 0.3 0.2 -0.3 -0.03 0.3 0.5 -2.4 -1.0 -1.2 -4.7 -1.1 -0.3 -0.03 -1.0 -0.3 0.1 -0.3 -0.6 -0.02 -0.1 0.01 -0.5 0.09 0.4 -0.6 -0.3 0.3 -0.4 0.3 0.5 0.07 0.7 0.6 0.3 0.09 -0.01 0.4 5890 RAD51L1 - 1 0.0 -0.2 -0.3 -0.3 0.1 0.01 0.06 -0.03 0.06 1.0 0.0 -0.01 0.2 1.0 0.2 0.4 1.0 0.5 1.1 -0.03 1.8 0.7 -1.9 -1.9 0.7 -0.1 -1.4 -0.3 -1.1 -0.8 0.2 -0.1 0.1 -0.01 -0.01 0.08 0.08 -0.1 0.2 0.1 0.2 -0.4 0.1 0.5 0.04 -0.4 0.1 2547 G22P1 - 1 0.6 0.2 0.02 1.2 1.2 1.4 1.4 1.4 1.4 0.8 0.3 0.3 1.1 1.2 1.4 -0.2 0.2 0.2 0.2 -1.6 -1.0 -0.8 -1.1 -0.4 -0.2 2071 ERCC3 - 1 0.2 0.9 0.5 -0.5 0.03 0.2 0.8 1.1 1.1 0.4 0.1 -0.1 -0.0070 0.2 1.2 1.1 1.5 1.1 0.7 1.0 1.7 1.2 1.4 1.6 1.4 -0.1 0.1 0.6 0.9 -0.1 0.3 0.2 -0.02 0.3 0.4 0.6 0.3 0.2 0.03 -1.3 -1.3 -2.0 -3.7 0.4 -0.5 -0.1 0.1 -0.2 0.1 -0.5 -0.4 -1.1 -0.3 -0.01 0.1 -0.05 0.3 -1.2 -1.1 -0.2 -0.01 -0.4 0.2 0.8 -0.05 0.1 0.0010 0.1 -0.1 0.05 1108 CHD4 - 1 -0.4 0.7 0.4 0.2 0.1 0.1 0.05 2.0 0.6 -0.1 0.01 -0.06 -0.2 0.5 1.7 1.4 1.9 1.2 1.2 0.2 1.3 1.2 1.4 0.9 2.4 -0.02 -0.3 0.4 1.5 0.7 1.1 0.3 0.1 0.3 1.7 -0.0090 -0.2 0.5 0.5 -0.4 -1.4 -3.8 -4.2 0.0050 -0.8 -0.7 -0.01 -0.6 -0.5 -0.4 -0.8 -1.1 -0.08 -0.01 0.01 -0.3 0.4 -1.2 -0.1 0.1 0.1 -0.3 0.05 1.1 0.5 0.03 -0.03 -0.2 0.01 -0.1 9534 ZNF254 - 1 -0.4 -0.2 -0.9 0.1 0.01 -0.0060 1.9 -0.1 -1.0 -2.9 -0.2 -0.3 7520 XRCC5 - 1 -0.09 1.0 0.8 1.2 0.3 0.7 0.3 1.0 0.7 0.2 0.03 0.02 -0.3 -0.02 0.3 0.1 1.0 0.9 0.7 2.6 1.1 1.5 1.8 2.2 -0.2 0.05 1.1 1.2 -0.5 0.1 0.3 -0.03 0.7 0.9 1.3 1.2 1.0 1.0 -1.3 -2.8 -1.3 -1.6 -0.03 -0.6 -0.04 -1.0 -0.1 -0.1 -0.9 -0.8 -1.0 -0.5 0.02 -0.3 -0.5 -0.8 -1.3 -1.5 0.3 -0.5 0.03 0.3 -0.1 -0.2 0.2 -0.1 -0.1 0.3 -0.6 5892 RAD51L3 - 1 0.03 0.02 0.0020 0.4 0.6 -0.4 0.09 1.0 1.1 0.05 0.4 1.2 1.7 1.1 1.5 1.4 0.8 1.0 -0.01 0.4 -1.4 -0.4 -0.8 -1.1 0.07 -0.06 -1.2 -0.7 -1.3 -0.2 -1.4 -0.3 -0.1 -1.9 -0.1 -1.0 0.2 -0.2 -0.3 -0.3 -0.2 -0.1 0.4 5889 RAD51C - 1 2.3 1.1 -0.6 0.1 -0.2 -0.6 0.3 -0.6 -0.04 -0.1 -0.2 0.2 2.9 0.2 0.4 0.5 0.4 0.2 0.1 0.8 1.0 1.6 0.9 1.6 1.2 -2.7 -3.2 -1.7 0.1 -0.2 -0.3 -0.2 -0.2 -0.5 -0.9 -1.8 -1.2 -0.9 -0.2 -0.2 -0.1 -1.1 -0.1 -0.0080 0.09 -0.05 -0.07 0.1 0.6 0.3 0.1 -0.3 -0.08 -0.1 2963 GTF2F2 - 1 -0.3 1.1 -0.6 0.1 0.1 -0.6 0.4 1.5 -0.02 1.1 -1.3 -0.01 -0.1 0.4 0.5 1.8 1.1 -0.02 0.7 1.0 1.6 1.0 1.1 -0.02 0.09 1.0 0.6 1.1 1.8 -0.4 0.1 -0.6 -0.2 0.05 -0.7 1.3 1.9 0.9 0.4 -4.4 -2.3 -1.4 -1.0 -1.9 -0.1 -1.0 -0.8 -0.2 -0.3 -0.3 -0.7 -0.6 -1.0 -1.4 0.07 -0.5 -0.1 -1.0 0.1 0.3 -0.06 -0.3 0.6 0.6 0.2 -0.2 0.4 0.1 0.5 -0.1 1655 DDX5 - 1 1.0 0.9 -0.02 0.09 0.2 0.6 0.2 0.9 0.8 -2.4 0.2 0.1 0.3 -0.09 -0.03 0.09 0.8 1.0 0.3 0.7 1.5 1.4 1.3 1.9 1.4 0.2 -0.4 0.7 0.2 -1.0 -0.4 -0.8 0.1 -0.8 -0.6 -0.4 0.5 0.8 0.9 -0.2 -1.5 -0.3 -0.7 -2.2 0.3 0.09 -1.0 0.8 0.2 0.5 -0.03 -0.8 -0.2 0.1 0.1 -0.2 -2.0 -1.0 -1.5 -2.2 -0.07 0.4 0.4 0.4 0.2 -0.04 -0.2 -0.6 -0.8 0.4 1660 DHX9 - 1 0.8 1.4 0.6 -0.1 0.8 1.2 1.3 1.0 0.3 0.2 -0.2 -0.1 0.06 -0.4 0.1 1.2 1.1 1.2 -0.2 1.3 1.5 1.4 1.4 1.8 1.7 -1.1 0.1 -0.6 0.1 -0.7 0.4 -1.9 0.8 -0.4 0.0070 0.5 0.5 1.4 1.3 -2.6 -2.4 -1.5 -0.4 -3.7 -0.2 -0.3 -2.3 0.3 0.6 -0.4 -0.6 -1.3 -0.7 0.3 -0.4 -0.8 -1.2 -0.6 -1.3 -0.6 -0.4 1.4 -0.4 -1.5 0.3 0.5 0.2 -0.04 0.4 0.1