GENE NAME GWEIGHT Ross00_RXF_393_CL9016_RENAL Ross00_HS_578T_CL5006_BREAST Sorlie01_BC702B_BE Chen02_SNU387_cells Ross00_786_0_CL9018_RENAL Ross00_ACHN_CL9023_RENAL Ross00_A498_CL9013_RENAL Ross00_TK_10_CL9024_RENAL Staunton01_RENAL_TK10 Ross00_UO_31_CL9004_RENAL Ross00_U251_CL12009_CNS Ross00_SNB_19_CL12002_CNS Sorlie01_BC6 Ross00_SF_295_CL12015_CNS Detweiler01_E3_U937_wild_type_2h Golub99_AML_16 Ross00_LOXIMVI_CL10001_MELANOMA Ross00_SNB_75_CL12005_RENAL Staunton01_BREAST_HS578T Sorlie01_BC37_FA Ross01_HMS32 Ross01_BJ_hTERT_PD210_Fibroblasts_UTSW Perou00_Hs578T_NCI Ross01_Hs578T_ATCC Whitfield02_4hr_Hela_Double_Thymidine Whitfield02_3_hr_Hela_Double_Thymidine_exp2 Boldrick02_Diversity_Dataset_S_aureus2_timecourse_1_0_hr Iyer99_Serum_08 Iyer99_Serum_06 Blader01_HFF_infected_with_PDS_tachyzoites_in_the_presence_of_cycloheximide Blader01_HFF_RNA_spiked_with_20_Toxo_RNA Blader01_HFF_infected_with_HFF_cell_debris_24_hours Whitfield02_5_hr_Hela_Double_Thymidine_exp3 Whitfield02_3_hr_Hela_Double_Thymidine_exp3 Whitfield02_4_hr_Hela_Double_Thymidine_exp3 Whitfield02_4h_Thy_Noc_Exp4 Boldrick02_Diversity_Dataset_Bp_LPS_timecourse_6_0_hr Boldrick02_Diversity_Dataset_E_coli1_timecourse_24_0_hr Chen02_HCC_HBV_HK11 Boldrick02_Diversity_Dataset_Bp_Minnesota1_timecourse_12_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_12_0_hr Boldrick02_Diversity_Dataset_Bp_Minnesota1_timecourse_24_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_24_0_hr Nutt03_Brain_CG_3 Garber01_248_97_LCLC Boldrick02_Diversity_Dataset_Bp_Minnesota1_timecourse_4_0_hr Boldrick02_Diversity_Dataset_Bp_Minnesota1_timecourse_6_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_4_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_6_0_hr Boldrick02_Diversity_Dataset_S_aureus2_timecourse_4_0_hr Boldrick02_Diversity_Dataset_E_coli1_timecourse_4_0_hr Boldrick02_Diversity_Dataset_S_aureus2_timecourse_6_0_hr Singh02_N60__normal Singh02_N14__normal Boldrick02_Diversity_Dataset_Bp_LPS_timecourse_1_0_hr Boldrick02_Diversity_Dataset_E_coli1_timecourse_0_5_hr Boldrick02_Diversity_Dataset_S_aureus2_timecourse_0_5_hr Boldrick02_Diversity_Dataset_S_aureus1_timecourse_2_0_hr Chen02_HCC_HBV_HK27 Boldrick02_Diversity_Dataset_S_aureus1_timecourse_6_0_hr Boldrick02_Diversity_Dataset_S_aureus1_timecourse_4_0_hr Perou00_BC118A_AF Boldrick02_Diversity_Dataset_Bp338_timecourse_0_5_hr Boldrick02_Diversity_Dataset_E_coli1_timecourse_1_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_1_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_2_0_hr Lessnick02_Run1, Day 0 Boldrick02_Diversity_Dataset_Bp_LPS_timecourse_4_0_hr Alizadeh00_Tonsil Chen02_Liver_SF11 Chen02_Liver_HBV_HK85 Chen02_Liver_HBV_SF21 Alizadeh00_Lymph_Node_lc4b007 Alizadeh00_DLCL_0013 Garber01_166_96_SCC Sorlie01_BC704B_AF Detweiler01_E2_U937_wild_type_4hb Alizadeh00_DLCL_0027 Shipp02_FSCC15 Ramaswamy01_Normal__Breast_BR_1 Ross00_Breast_Tumor_2_X_NCI_reference Ross00_Normal_Breast Ross00_BC2_Lymph_Node_X_NCI_reference Chen02_Synovial_Cell_Sarcoma_SF14 Boldrick02_Dose_Response_Dataset_S_aureus_1000X_dose_timecourse_2_0hr Garber01_75_95_combined Iyer99_Serum_cyc_4_hours Blader01_Reverse_labelling_expt_ Detweiler01_E2_U937_wild_type_2h Boldrick02_U937_Dataset_Bp537_timecourse_6hr Detweiler01_E1_U937_wild_type_4h Ross01_HME31 Perou00_HMEC_C_IFNalpha Perou00_HMEC_C_Confluent Ross00_HOP_62_CL1026_NSCLC Perou00_BC805B_AF Sorlie01_BC805A_BE Chen02_Met_Colon_Cancer_SF5 Chen02_HCC_HBV_HK21 Perou00_BC708A_AF Cuadras02_Tc_24h Boldrick02_Diversity_Dataset_Untreated_timecourse_6_0_hr Sorlie01_BC206A_BE Chen02_Liver_HBV_HK42 Sorlie01_BC708B_BE Alizadeh00_DLCL_0002 Alizadeh00_DLCL_0002_lc4b033 Garber01_80_96_Adeno Alizadeh00_DLCL_0016 Alizadeh00_DLCL_0005_lc4b064 Garber01_6_00_LCLC Blader01_Normal_labelling_expt Chen02_Liver_HBV_HK67 Sorlie01_BC111A_BE Boldrick02_Dose_Response_Dataset_Bp338_100X_dose_timecourse_24_0hr Boldrick02_Dose_Response_Dataset_Bp338_1000X_dose_timecourse_6_0hr Boldrick02_Dose_Response_Dataset_Bp338_100X_dose_timecourse_6_0hr Boldrick02_Dose_Response_Dataset_Bp338_1000X_dose_timecourse_12_0hr Chen02_Liver_HCV_SF3 Perou00_BC213A_AF Boldrick02_Dose_Response_Dataset_Bp338_100X_dose_timecourse_4_0hr Sorlie01_BC406A_BE Sorlie01_Normal_Breast3 Garber01_fetal_lung Sorlie01_BC402B_BE Garber01_319_00MT1_Adeno Perou00_BC305B_AF Chen02_Liver_SF9 Chen02_Liver_HBV_HK46 Chen02_Liver_HBV_HK39 Chen02_Liver_HBV_HK31 Chen02_Liver_HBV_HK15 Chen02_Liver_HBV_HK24 Chen02_Liver_HCV_SF29_S1 Sorlie01_BC808A_BE Chen02_Liver_HBV_HK18 Chen02_HCC_SF4 Cuadras02_Infection_1_RRVa_16h_vs_mocka16h Cuadras02_Infection_3_RRVb_16h_vs_mocka_16h Boldrick02_Diversity_Dataset_Ionomycin_PMA_timecourse_4_0_hr Chen02_FNH_SF33 Chen02_Liver_SF4 Garber01_319_00MT2_Adeno Garber01_246_97_SCC_p Boldrick02_Dose_Response_Dataset_Bp338_1000X_dose_timecourse_2_0hr Boldrick02_Dose_Response_Dataset_Bp_LPS_0_1ug_ml_timecourse_4_0hr Boldrick02_Dose_Response_Dataset_S_aureus_1000X_dose_timecourse_4_0hr Boldrick02_Dose_Response_Dataset_S_aureus_1000X_dose_timecourse_6_0hr Boldrick02_Dose_Response_Dataset_Bp338_100X_dose_timecourse_1_0hr Cuadras02_Infection_2_RRVb_16h_vs_mockb_16h Garber01_314_99_normal Garber01_315_99_normal Garber01_306_99_normal Boldrick02_Dose_Response_Dataset_S_aureus_100X_dose_timecourse_6_0hr Bhattacharjee01_AD-202t2-A139-4 Bhattacharjee01_SMCL-301-A306-5 Bhattacharjee01_SMCL-5937-A307-5 Bhattacharjee01_COID-COID13t1-A350-6 Bhattacharjee01_SQ-SQ10t1-A362-6 Bhattacharjee01_AD-188t1-A216-8 Bhattacharjee01_AD-131T1-A15-A200-1* Bhattacharjee01_COID-4385-A301-5 Bhattacharjee01_COID-1429-A303-5 Sorlie01_BC_HBC5 Sorlie01_BC1369 Bhattacharjee01_COID-COID16t1-A352-6 Bhattacharjee01_AD-203t1-A140-4 * Bhattacharjee01_AD-163t1-A203-8 * Sorlie01_BC120A_BE Bhattacharjee01_AD-238t2x-A157-4 Chen02_HCC_HCV_SF3 Bhattacharjee01_AD-213t1-A146-4 Bhattacharjee01_AD-262t1a-A259-10 * Bhattacharjee01_AD-267t1-A91-3 Bhattacharjee01_AD-118t1-A13-1 Bhattacharjee01_AD-232t1-A154-4 Bhattacharjee01_COID-COID12t1-A349-6 Bhattacharjee01_AD-276t1 dup b4 -A96-3 * Bhattacharjee01_AD-115T1-A12-1 * Bhattacharjee01_AD-379t1-A116-3 * Armstrong01_ALL_21 Armstrong01_ALL_22 Armstrong01_ALL_11 Armstrong01_ALL_19 Armstrong01_MLL__8 Armstrong01_MLL_14 Armstrong01_ALL_8 Armstrong01_ALL_2 Armstrong01_ALL_6 Armstrong01_ALL_7 Armstrong01_ALL_23 Armstrong01_MLL__6 Armstrong01_ALL_14 Armstrong01_MLL__3 Armstrong01_MLL_12 Armstrong01_AML_11 Armstrong01_ALL_10 Armstrong01_ALL_9 Armstrong01_MLL_16 Armstrong01_MLL_20 Armstrong01_MLL__1 Armstrong01_MLL_10 Armstrong01_ALL_20 Armstrong01_ALL_18 Iyer99_Unsynchronized Iyer99_Serum_20 Lessnick02_Run 1, Day 2 Lessnick02_Run 2, Day 1 Lessnick02_Run 1, Day 1 Blader01_HFF_infected_with_PDS_tachyzoites_4_hour Blader01_HFF_infected_with_PDS_tachyzoites_2_hour Boldrick02_Dose_Response_Dataset_Untreated_timecourse_6_0hr Detweiler01_E3_U937_mock_2hc Detweiler01_E1_U937_mock_30m Boldrick02_U937_Dataset_Uninfected_timecourse_4_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_6_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_2_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_0_5_hr Boldrick02_U937_Dataset_Uninfected_timecourse_0_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_1_0_hr Garber01_230_97_SCLC Garber01_314_99_SCLC Iyer99_Serum_0_25 Cuadras02_Control_2_mockc_16h_vs_mocka_16h Sorlie01_BC214B_BE Ross00_SK_MEL_2_CL10005_MELANOMA Whitfield02_34h_Thy_Noc_Exp4 Alizadeh00_Blood_B_cells_anti_IgM_CD40L_24h Bhattacharjee01_AD-158t1-A247-10 * Singh02_T33__tumor Singh02_T16__tumor Bhattacharjee01_AD-367t1-A110-3 Garber01_59_96_SCC Garber01_319_00PT_Adeno Boldrick02_Dose_Response_Dataset_0_0hr Boldrick02_Dose_Response_Dataset_Untreated_timecourse_4_0hr Boldrick02_Dose_Response_Dataset_Bp338_100X_dose_timecourse_0_0hr Garber01_178_96_Adeno Blader01_HFF_infected_with_PDS_tachyzoites_14_hours_duplicate_1 Blader01_HFF_infected_with_PDS_tachyzoites_14_hours_duplicate_2 Blader01_HFF_infected_with_PDS_tacyzoites_24_hour Chen02_HCC_HBV_HK67_T3 Chen02_HCC_HBV_HK65_T4 Chen02_HCC_HBV_HK63_T1 Chen02_HCC_HBV_HK64_T1 Chen02_HCC_HBV_HK64_T2 Chen02_HCC_HBV_HK64_T6 Chen02_HCC_HBV_HK64_T5 Chen02_HCC_HBV_HK14 Chen02_HCC_HBV_HK20 Chen02_HCC_HBV_HK4 Boldrick02_Live_vs_Killed_Dataset_Bp338_Live_timecourse_12hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Live_timecourse_4hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Killed_timecourse_0_5hr Boldrick02_Live_vs_Killed_Dataset_0_0hr_1 Boldrick02_Live_vs_Killed_Dataset_0_0hr_2 Boldrick02_Live_vs_Killed_Dataset_0_0hr_3 Armstrong01_ALL_12 Armstrong01_ALL_13 Armstrong01_MLL_19 Armstrong01_ALL_5 Armstrong01_ALL_1 Armstrong01_ALL_15 Armstrong01_ALL_16 Armstrong01_MLL__4 Armstrong01_MLL__7 Armstrong01_AML_23 Armstrong01_AML_7 Armstrong01_ALL_17 Armstrong01_MLL_13 Armstrong01_MLL_15 Armstrong01_AML_10 Armstrong01_AML_16 Armstrong01_AML_3 Armstrong01_AML_18 Armstrong01_MLL_17 Armstrong01_AML_12 Armstrong01_AML_8 Armstrong01_AML_9 Sorlie01_BC606B_AF Armstrong01_AML_25 Perou00_NB4_ATRA Perou00_MOLT4 Golub99_ALL_21302_B-cell Ross00_SR_CL7019_LEUKEMIA Perou00_RPMI_8226 Perou00_MCF7_NCI Perou00_T47D Ramaswamy01_Tumor__Leukemia_ALL-T_ALL_ 92_571 _BM Ramaswamy01_Tumor__Lymphoma_Follicular_FSCC_S93_14386 Chen02_Met_Colon_Carcinoid_SF11 Ramaswamy01_Normal__Germinal_Center_GC3 Boldrick02_U937_Dataset_BpTox6_timecourse_0_hr Perou00_SK_BR_3 Golub99_ALL 522 TA- ML Norel Ross00_K562B_repro Sorlie01_BC4_LN4 Chen02_Met_Ovarian_Granulosa_Cell_Tumor_SF39_T1 Chen02_HCC_HBV_CH2 Chen02_HCC_HBV_HK47 Chen02_HCC_HBV_HK85_T1 Shipp02_DLBC42 Shipp02_DLBC13 Shipp02_FSCC2 Shipp02_DLBC49 Perou00_BC38_LN38 Shipp02_DLBC36 Garber01_147_96_Adeno Garber01_265_98_Adeno Sorlie01_BC107B_BE Sorlie01_BC503B_BE Shipp02_DLBC16 Shipp02_FSCC13 Shipp02_DLBC25 Ross00_MOLT_4_CL7006_LEUKEMIA Ross00_CCRF_CEM_CL7003_LEUKEMIA Sorlie01_BC303B_BE Ross00_COLO205_CL4010_COLON Ross00_SW_620_CL4009_COLON Blader01_HFF_infected_with_PDS_tachyzoites_24_hour Bhattacharjee01_AD-172t2-A213-8 * Sorlie01_BC201B_BE Perou00_184A1_LATE Perou00_BT_474_ATCC Garber01_204_97_Adeno Ross00_MALME_3M_CL10002_MELANOMA Perou00_184B5 Perou00_184Aa Perou00_HUVEC Perou00_MDA_MB_231_NCI Ramaswamy01_Tumor__Prostate_Adeno_P_0025 Sorlie01_BC108A_BE Ross00_NCI_H522_CL1003_NSCLC Whitfield02_14_hr_Hela_Double_Thymidine Garber01_306_99_Adeno Golub99_ALL_17929_B-cell Ross00_OVCAR_8_CL6005_OVARIAN Chen02_HCC_HK23 Golub99_ALL 1101 TA- ML Norel Golub99_ALL_20185_B-cell Golub99_ALL_19183_B-cell Ross00_MDA_N_CL5012_BREAST Garber01_315_99_SCLC Garber01_315_99_node Ross00_HCT_15_CL4015_COLON Staunton01_MELAN_UACC257 Golub99_ALL_28373_B-cell Garber01_3_00_SCC Garber01_245_97_node Chen02_HCC_HBV_SF12 Ross00_SK_MEL_5_CL10007_MELANOMA Ross00_SK_MEL_28_CL10008_MELANOMA Ross00_UACC_62_CL10020_MELANOMA Bhattacharjee01_SMCL-SMCL4t1-A354-6 Chen02_Hep40_cells Golub99_ALL_9723_T-cell Golub99_ALL_5982_B-cell Ramaswamy01_Tumor__Ovary_Adeno_HCTN_0002c011N Ross01_BT474_Stanford Golub99_ALL 1319 TA- ML Norel Golub99_ALL 23368 TA- Norel Golub99_ALL_17281_B-cell Boldrick02_U937_Dataset_BpTox6_timecourse_0_5_hr Boldrick02_U937_Dataset_Bp537_timecourse_0hr Boldrick02_U937_Dataset_BpA2_6_timecourse_0_0_hr Boldrick02_U937_Dataset_Bp338_timecourse_0_0_hr Armstrong01_MLL_18 Staunton01_MELAN_M14 Staunton01_MELAN_MALME3M Staunton01_MELAN_SKMEL5 Staunton01_COLON_SW620 Staunton01_PROSTATE_DU145 Staunton01_MELAN_SKMEL28 Staunton01_NSCLC_A549ATCC 2251 FGF6 - 1 -0.7 -3.3 -0.9 0.0 -0.3 -0.3 0.0 0.7 -0.3 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 0.6 -0.1 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 0.0 0.0 0.0 -0.2 -0.3 -0.3 -0.2 -1.7 -1.7 -1.7 2.7 -1.7 -1.7 -1.7 3.0 -1.7 -1.7 2.4 1.9 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 -1.7 2.3 -1.7 -1.7 1.8 0.8 -0.3 -1.9 -0.06 -0.5 -2.9 -0.5 -0.4 0.1 -3.6 -2.5 -1.6 -0.2 -1.9 0.1 -3.3 -3.3 -3.3 -0.9 0.8 1.2 -2.0 -1.5 1.0 -0.05 0.3 0.3 -1.7 -0.9 -0.9 -0.05 -0.9 0.8 -0.9 0.1 2919 CXCL1 - 1 -0.1 0.5 1.1 0.08 0.1 -0.2 0.09 0.2 -0.06 -0.3 0.1 0.6 0.1 1.3 0.2 -0.1 2.7 -0.1 -2.5 0.4 -0.8 0.3 0.8 1.8 -0.6 -0.3 2.0 1.8 2.9 0.1 0.4 0.7 0.06 0.7 0.2 -0.3 2.0 1.8 1.4 1.2 0.1 2.2 2.2 1.5 1.5 1.4 1.6 1.8 0.9 0.6 1.5 1.4 0.9 1.0 1.1 -1.2 1.2 1.1 1.6 1.4 1.1 1.8 2.2 0.2 3.2 1.8 3.1 0.9 1.3 4.0 3.4 -0.1 0.3 0.2 -1.6 1.9 1.8 -0.07 8.2 2.9 0.2 2.2 3.7 3.2 1.7 0.7 -0.8 -0.3 1.8 0.1 1.0 1.7 -0.1 -0.3 1.0 -0.06 1.7 1.0 1.8 1.9 1.5 1.3 -1.8 1.8 -0.8 -0.1 1.1 1.0 0.4 1.0 0.3 1.4 1.0 2.5 0.5 0.7 1.3 0.3 2.1 2.0 1.5 1.9 1.9 1.7 1.6 -1.0 0.8 -1.0 2.6 2.3 1.7 1.1 2.0 0.5 0.9 1.0 0.7 1.9 1.3 1.4 1.7 1.8 1.1 1.1 1.3 -1.1 2.0 -1.2 0.2 0.2 -0.03 -1.1 -1.3 -1.2 -1.9 -1.4 -4.7 -4.9 -4.8 -5.0 -4.7 -5.0 -0.5 -1.2 0.2 -0.5 1.6 0.4 -0.3 -0.3 -0.8 0.7 -1.2 -1.0 -0.9 -0.9 -2.8 -2.0 -2.5 -2.5 -0.05 -2.0 -2.6 -1.1 -2.4 -2.6 0.05 -0.6 -2.6 -0.9 -0.9 -1.0 -2.7 -2.9 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