GENE NAME GWEIGHT Detweiler01_E6_U937_wild_type_3h Detweiler01_E6_U937_wild_type_2h Detweiler01_E6_U937_phoP_3h Detweiler01_E6_U937_phoP_2h Detweiler01_E6_U937_wild_type_4h Detweiler01_E6_U937_phoP_4h Detweiler01_E6_U937_mock_1h Detweiler01_E6_U937_mock_2h Detweiler01_E6_U937_wild_type_1h Garber01_180_96_Adeno Chen02_HCC_HBV_HK62_T2 Bhattacharjee01_AD-269t1-A94-3 Perou00_BC38_LN38 Perou00_BC2_LN2 Chen02_HCC_HBV_HK50 Sorlie01_BC16 Sorlie01_BC38 Chen02_Liver_HCV_SF30 Perou00_BC711A_AF Sorlie01_BC305A_BE Sorlie01_BC107B_BE Chen02_HCC_HBV_SF34_1 Chen02_HCC_HBV_SF34_3 Chen02_HCC_HBV_SF34_2 Chen02_Liver_HBV_SF21 Alizadeh00_DLCL_0037_lc4b036 Chen02_Liver_HBV_SF22 Chen02_Liver_HBV_SF12 Chen02_Liver_HBV_SF17 Garber01_191_96_Adeno Chen02_Liver_HBV_HK10_S2 Garber01_6_00_LCLC Ross01_HME31 Chen02_HCC_HBV_SF21 Chen02_Liver_HBV_SF23 Alizadeh00_DLCL_0013 Alizadeh00_DLCL_0016 Alizadeh00_DLCL_0039_lc4b039 Alizadeh00_DLCL_0002_lc4b033 Garber01_222_97_Adeno Garber01_226_97_Adeno Boldrick02_Diversity_Dataset_E_coli1_timecourse_6_0_hr Boldrick02_Diversity_Dataset_E_coli1_timecourse_4_0_hr Alizadeh00_DLCL_0020 Boldrick02_Diversity_Dataset_Bp338_timecourse_0_0_hr Boldrick02_Diversity_Dataset_E_coli1_timecourse_0_0_hr Boldrick02_Diversity_Dataset_S_aureus1_timecourse_6_0_hr Boldrick02_Diversity_Dataset_S_aureus1_timecourse_4_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_24_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_4_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_6_0_hr Boldrick02_Diversity_Dataset_Bp338_timecourse_12_0_hr Boldrick02_Diversity_Dataset_S_aureus1_timecourse_2_0_hr Detweiler01_E2_U937_wild_type_4hb Ross00_Breast_Tumor_16_X_NCI_reference Alizadeh00_DLCL_0027 Armstrong01_AML_19 Staunton01_LEUK_SR Ross00_SR_CL7019_LEUKEMIA Cuadras02_Infection_3_RRVb_16h_vs_mocka_16h Sorlie01_BC208A_BE Sorlie01_BC_HBC2 Alizadeh00_DLCL_0002 Garber01_248_97_LCLC Chen02_HCC_SF9 Sorlie01_BC120A_BE Ross00_CCRF_CEM_CL7003_LEUKEMIA Sorlie01_BC4_LN4 Ramaswamy01_Tumor__Lymphoma_Large_B-Cell_L_B_CELL_S98_8825_Y Ramaswamy01_Tumor__Lymphoma_Follicular_FSCC_S93_14386 Ramaswamy01_Tumor__Lymphoma_Large_B-Cell_L_B_CELL_S98_12453_R Chen02_Liver_HCV_SF3 Detweiler01_E1_U937_wild_type_4h Garber01_314_99_normal Garber01_315_99_normal Chen02_Liver_HBV_HK28 Chen02_Liver_HBV_HK29 Chen02_Liver_HBV_SF34 Chen02_Liver_SF36 Chen02_Liver_HBV_HK39 Chen02_Liver_HBV_SF32 Chen02_Liver_SF4 Chen02_Liver_HK23 Chen02_Liver_SF16 Chen02_Liver_HBV_HK84 Nutt03_Brain_CG_14 Blader01_Reverse_labelling_expt_ Chen02_Liver_HBV_HK85 Chen02_Liver_HCV_SF29_S2 Chen02_Liver_SF5 Chen02_Liver_HBV_HK18 Chen02_Liver_HBV_HK17 Perou00_BC115A_AF Perou00_BC402B_AF Perou00_BC709A_AF Sorlie01_BC402B_BE Bhattacharjee01_AD-118t1-A13-1 Bhattacharjee01_NL-1675-A409-7 Bhattacharjee01_AD-136t2-A201-8 Bhattacharjee01_NL-279n1-A98-3 Bhattacharjee01_NL-3104-A331-6 Chen02_HCC_HBV_HK11 Bhattacharjee01_AD-262t1a-A259-10 * Detweiler01_E2_U937_wild_type_1hb Chen02_HCC_HBV_HK39 Chen02_Liver_HBV_HK36 Chen02_Liver_HBV_HK1 Blader01_HFF_infected_with_PDS_tachyzoites_1_hour Blader01_HFF_infected_with_HFF_cell_debris_24_hours Blader01_HFF_RNA_spiked_with_20_Toxo_RNA Garber01_204_97_Adeno Alizadeh00_DLCL_0052_lc4b060 Detweiler01_E6_U937_wild_type_2hb Alizadeh00_OCI_Ly10_lc8n086 Boldrick02_Live_vs_Killed_Dataset_Bp338_Live_timecourse_0_5hr Sorlie01_BC805A_BE Sorlie01_BC11_FA Alizadeh00_Jurkat Chen02_HCC_SF8 Alizadeh00_FL_10_CD19_ Alizadeh00_FL_11_CD19_ Sorlie01_BC124A_BE Chen02_HCC_HBV_SF35_2 Blader01_HFF_were_treated_with_1_45x107_toxo_in_a_transwell_plate Alizadeh00_SUDHL6 Whitfield02_36h_Thy_Noc_Exp4 Garber01_234_97_Adeno Garber01_207_97_SCLC Garber01_315_99_node Garber01_42_95_SCC Staunton01_MELAN_M14 Staunton01_NSCLC_NCIH23 Staunton01_BREAST_MDN Chen02_HCC_HBV_HK65_T1 Chen02_HCC_HBV_HK9 Chen02_HCC_HBV_HK65_T4 Chen02_HCC_HK2 Chen02_HCC_HBV_HK65_T2 Chen02_HCC_HBV_HK64_T6 Chen02_HCC_HBV_HK64_T3 Chen02_HCC_HBV_HK64_T5 Chen02_HCC_HBV_HK64_T1 Chen02_HCC_HBV_HK31 Garber01_3_00_SCC Ross00_UACC_62_CL10020_MELANOMA Alizadeh00_OCI_Ly3 Sorlie01_BC201B_BE Garber01_306_99_node Boldrick02_Diversity_Dataset_Ionomycin_PMA_timecourse_12_0_hr Detweiler01_E3_U937_mock_2hb Blader01_HFF_infected_with_PDS_tachyzoites_24_hour Boldrick02_Diversity_Dataset_Ionomycin_PMA_timecourse_1_0_hr Ross00_U251_CL12009_CNS Detweiler01_E3_U937_wild_type_1hc Detweiler01_E3_U937_mock_4hb Detweiler01_E3_U937_wild_type_2hb Detweiler01_E3_U937_mock_2hc Detweiler01_E3_U937_wild_type_0_5hb Detweiler01_E3_U937_phoP_0_5hb Chen02_Met_Granulosa_Cell_Tumor_SF39_T2 Chen02_Met_Ovarian_Granulosa_Cell_Tumor_SF39_T1 Chen02_Undifferentiated_Carcinoma_HK17 Pollack99_HMEC_X_BT474_sva117_sf Chen02_SNU475_cells Garber01_58_95_SCC Chen02_Hep40_cells Perou00_BT_474_ATCC Garber01_232_97_node Ross01_BT474_Stanford Rosenwald01_JVM_HH Bhattacharjee01_COID-4385-A301-5 Ross00_K562B_repro Bhattacharjee01_COID-COID16t1-A352-6 Shipp02_DLBC16 Shipp02_DLBC52 Perou00_184Aa Golub99_AML_1 Golub99_AML 19 PK Norel Chen02_HCC_HBV_HK63_T1 Blader01_Normal_labelling_expt Blader01_HFF_infected_with_PDS_tachyzoites_14_hours_duplicate_2 Blader01_HFF_infected_with_PDS_tachyzoites_14_hours_duplicate_1 Golub99_AML_20 Perou00_184A1_LATE Perou00_HUVEC Golub99_ALL SH 6 Golub99_ALL_9723_T-cell Golub99_AML 12 ML Chen02_HCC_HBV_HK44 Perou00_MOLT4 Chen02_HCC_HBV_CH2 Alizadeh00_U937 Ramaswamy01_Normal__Cerebellum_Brain_Ncer_NCB1 Ramaswamy01_Tumor__Breast_Adeno_92_I_078 Chen02_Met_Colon_Cancer_SF37 Detweiler01_E3_U937_mock_1hc Detweiler01_E3_U937_mock_1ha Chen02_SNU398_cells Chen02_SK_HEP_1_cells Chen02_HepG2_cells Sorlie01_BC704B_AF Perou00_MDA_MB_231_NCI Perou00_T47D Ramaswamy01_Tumor__CNS_Glioblastoma_GlioB_9 Chen02_SNU182_cells Perou00_SK_BR_3 Perou00_MCF7_NCI Ramaswamy01_Tumor__CNS_Glioblastoma_GlioB_1 Ramaswamy01_Normal__Prostate_PR_6 Ramaswamy01_Normal__Prostate_PR_3 Armstrong01_ALL_15 Armstrong01_ALL_17 Armstrong01_MLL_15 Armstrong01_ALL_20 Armstrong01_ALL_14 Boldrick02_U937_Dataset_BpTox6_timecourse_0_hr Boldrick02_U937_Dataset_Bp537_timecourse_0_5hr Boldrick02_U937_Dataset_BpTox6_timecourse_0_5_hr Boldrick02_U937_Dataset_Bp537_timecourse_0hr Boldrick02_U937_Dataset_Bp338_timecourse_0_0_hr Boldrick02_U937_Dataset_Bp338_timecourse_1_0_hr Boldrick02_U937_Dataset_Bp338_timecourse_0_5_hr Boldrick02_U937_Dataset_BpA2_6_timecourse_1_0_hr Boldrick02_U937_Dataset_BpA2_6_timecourse_0_5_hr Boldrick02_U937_Dataset_BpA2_6_timecourse_0_0_hr Boldrick02_U937_Dataset_BpA2_6_timecourse_2_0_hr Boldrick02_U937_Dataset_Bp338_timecourse_2_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_0_5_hr Boldrick02_U937_Dataset_Uninfected_timecourse_6_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_0_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_1_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_4_0_hr Boldrick02_U937_Dataset_Uninfected_timecourse_2_0_hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Killed_timecourse_2hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Killed_timecourse_6hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Live_timecourse_4hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Live_timecourse_6hr Boldrick02_Live_vs_Killed_Dataset_Bp338_Live_timecourse_2hr Boldrick02_Live_vs_Killed_Dataset_0_0hr_1 Boldrick02_Live_vs_Killed_Dataset_0_0hr_2 Boldrick02_Live_vs_Killed_Dataset_Bp338_Killed_timecourse_0_5hr 1439 CSF2RB - 1 1.3 0.9 1.2 1.1 1.9 1.7 1.1 1.3 1.1 0.8 1.1 1.7 1.9 1.2 0.7 1.0 0.3 0.2 0.2 1.2 0.8 1.3 1.3 1.4 0.6 0.08 1.2 1.5 0.8 0.9 1.0 1.0 1.2 1.1 0.8 1.3 0.8 0.4 0.4 1.3 1.4 -0.4 -0.5 -1.0 -0.1 -0.2 -0.2 -0.9 1.2 -0.1 0.07 0.09 -0.1 1.6 1.7 1.9 2.0 -0.3 -0.5 -0.1 0.3 1.0 1.7 2.0 2.3 1.0 1.1 1.9 -1.4 -1.4 -1.4 0.3 1.0 1.2 1.4 1.1 0.7 0.9 1.2 0.3 0.6 0.4 -0.04 0.5 0.1 0.0 0.4 0.3 0.09 0.7 -0.3 0.1 0.6 1.1 1.2 0.8 -0.08 -0.08 -0.08 -0.08 -0.08 1.1 -0.08 0.6 1.0 0.3 0.2 0.01 -0.03 -0.1 -1.2 -1.0 -1.4 -1.5 -0.8 0.1 -1.0 0.2 0.2 0.06 -0.3 -0.5 -0.2 -0.5 -0.8 -0.5 -1.5 -0.8 -0.7 -0.9 -0.3 -0.3 -0.3 -1.2 -1.8 -0.6 -0.3 -0.4 -0.4 -0.2 -0.8 -0.6 -0.6 0.04 -0.8 -0.7 0.3 -0.9 -0.8 0.2 0.1 -0.3 -0.07 -1.1 -1.2 -1.0 -0.6 -0.4 -0.9 -1.5 -1.6 -0.1 -0.2 -0.1 -1.4 -1.1 -2.8 -1.5 -1.3 -0.7 -0.08 -0.9 -0.08 0.2 -2.8 -2.0 1.9 -2.4 -1.0 0.0080 0.2 0.8 -2.4 -2.2 1.3 0.6 0.6 1.1 -3.9 -3.0 -1.5 1.5 -1.4 -1.2 -1.5 -1.4 -1.2 -1.4 -1.2 -1.2 -1.2 -1.9 -1.4 -1.4 -2.7 -1.7 -1.9 -1.4 -1.4 -1.4 2.1 -1.1 -4.5 -4.5 -0.3 -1.3 0.1 -1.0 -0.09 -0.3 -0.1 -0.3 -0.5 -0.2 -0.7 -0.5 -0.7 -1.4 -0.8 -1.1 -0.7 -0.1 -0.7 0.7 1.7 0.5 0.1 0.9 0.8 0.7 0.7 3561 IL2RG - 1 1.5 1.3 1.5 1.5 1.4 1.5 1.3 1.7 1.6 1.8 1.2 0.9 2.4 1.9 0.5 1.3 1.1 0.8 1.0 1.7 1.9 0.1 1.5 1.7 0.03 -0.07 0.8 -0.3 0.3 -0.5 0.4 1.4 0.9 1.9 1.1 0.08 0.5 0.9 1.3 0.7 1.1 0.4 0.2 0.2 0.1 0.4 0.2 0.4 -0.05 0.1 0.1 -0.2 0.1 1.1 1.2 -0.05 0.7 -1.0 -0.3 0.1 1.4 3.0 0.5 0.2 2.1 0.8 -1.6 3.1 1.0 1.1 1.3 0.2 0.2 0.07 0.04 0.1 -0.3 -0.1 -0.3 0.5 0.5 1.0 -0.0050 0.2 0.3 0.06 0.7 -0.1 0.5 1.5 0.1 0.09 0.4 1.1 1.2 1.2 0.3 0.7 0.6 0.1 0.1 0.9 0.8 1.2 1.1 0.8 -0.4 0.2 1.1 -0.1 -1.1 0.7 0.6 -1.1 0.6 -0.02 0.4 0.4 0.3 -0.7 -0.7 -0.6 -1.6 -1.3 -0.2 -0.3 -0.2 -0.4 -0.4 -1.1 -1.8 -2.3 0.4 -2.8 -0.9 -1.5 -1.3 -0.5 -1.6 -1.6 -3.3 -0.9 -0.4 -1.6 -2.2 -1.0 -1.0 -1.5 -0.2 -0.1 0.2 0.2 -1.0 -1.4 -1.5 -1.8 -0.8 -0.8 -1.0 -1.7 -2.8 -0.5 -0.8 -0.5 -0.9 -1.5 -2.1 -1.7 -1.1 0.07 -1.4 -1.0 -0.3 -1.1 0.09 -1.4 -1.2 -1.2 -0.8 0.2 0.2 0.3 -2.0 -2.0 -3.0 -1.0 1.5 0.09 -3.2 3.0 -0.5 0.4 -1.5 -4.4 1.6 -1.7 -1.7 -2.3 -3.5 -1.6 -6.1 -4.9 -3.2 -2.0 -3.0 -2.8 -1.8 -1.6 -1.4 -2.0 -0.1 0.1 0.8 0.3 -1.4 1.3 0.8 1.1 1.0 0.6 0.6 0.7 0.4 0.6 0.5 0.4 0.6 0.08 0.02 -0.2 -0.1 0.1 -0.1 0.2 0.2 0.4 0.1 0.2 -0.1 0.2 0.04 4615 MYD88 - 1 1.4 1.5 1.6 1.3 1.9 2.2 1.2 1.3 0.9 0.9 0.3 0.5 0.3 0.05 0.2 0.1 -0.0090 0.6 0.5 0.4 -0.5 -0.1 -0.07 -0.03 0.6 0.6 -0.03 0.07 0.3 0.2 0.3 0.2 0.5 0.1 -0.07 -0.04 0.3 0.5 -0.07 -0.03 0.4 0.7 0.3 0.4 0.8 -0.7 -0.0010 -0.4 0.4 0.08 -0.3 0.5 -0.08 0.8 -0.3 0.5 1.5 0.9 0.4 0.9 1.5 1.0 0.02 0.1 1.8 0.02 -0.7 0.09 1.3 1.0 -0.09 0.6 0.4 0.5 0.6 0.4 0.1 0.4 0.4 0.2 1.2 1.3 0.3 0.4 0.9 0.8 -0.0010 0.3 0.8 0.1 0.2 -0.1 0.03 0.4 0.4 0.4 0.6 0.6 -0.2 -0.04 0.1 -0.3 0.6 0.01 0.4 -0.5 -0.4 -0.8 0.2 0.2 -0.1 0.3 0.2 -1.2 0.2 -0.03 -1.1 -0.4 0.1 -0.6 -0.7 1.0 -0.9 0.2 0.5 -0.5 0.2 -0.1 -0.5 0.1 -0.2 0.1 0.5 0.2 -1.4 -1.1 -0.07 0.5 -0.3 -0.1 0.5 0.1 0.3 0.2 -1.0 -0.9 -1.1 -0.3 -0.6 -0.9 -1.1 -1.3 -1.2 -1.1 -1.5 -0.8 -2.1 -2.0 -0.5 -1.5 -0.2 0.8 0.2 0.7 -0.6 -6.6 0.8 -0.08 -0.2 -0.2 -0.1 -0.1 -0.1 -0.1 -0.03 0.3 0.2 -0.4 0.9 -0.6 0.3 -0.9 -1.3 -1.3 -1.4 -0.7 -2.6 -1.9 0.0020 -0.5 -0.1 0.2 -0.1 -3.0 2.2 -0.5 -1.4 -0.7 0.09 0.5 0.5 0.4 -0.4 0.8 -0.1 -0.3 -0.5 -0.2 -0.3 0.2 -0.2 -0.4 -0.5 -0.2 -0.4 -0.5 -0.6 -0.2 0.7 0.03 0.1 -0.1 -0.2 -0.2 0.1 3566 IL4R - 1 1.1 1.6 0.9 1.2 1.1 0.6 1.4 1.2 1.3 1.2 0.6 0.2 1.0 0.4 0.3 0.03 0.5 0.2 0.1 0.6 0.1 0.2 -0.09 0.2 1.2 1.6 1.4 1.1 0.9 0.7 0.2 0.4 1.3 -0.2 0.7 -0.7 -0.4 -0.7 -0.1 0.5 0.3 0.2 0.3 -0.9 -0.08 0.04 0.6 0.3 0.2 0.5 0.6 0.2 0.4 0.3 1.4 -0.8 0.5 2.3 2.9 0.7 0.5 1.1 -0.8 0.3 0.02 0.3 0.0090 0.2 1.5 3.2 1.7 1.0 0.7 0.7 0.8 1.5 1.8 1.8 2.1 1.0 1.3 1.4 1.0 1.4 1.2 1.6 1.7 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