Module 319

Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
General Properties
Below we list the number of gene sets from which the module was composed was originally composed, and the number of genes and experiments that it contains. Clicking on the number of genes will display a detailed list of all the genes in the module. Clicking on the number of experiments will display a detailed list of all the experiments in the module.
Num gene sets: 2
Num genes: 37 (see 7 additional genes for this module)
Num experiments: 51 (24 induced, 27 repressed)


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Gene sets
Below we list the gene sets from which the module was originally composed. Clicking on a gene set will display all the genes associated with that gene set. Also listed are all the other modules in which the gene set participates.
Blader01 24 319 495
Blader01 36 319 495


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Enriched clinical annotations
For each of the clinical annotations, we tested whether it was enriched in the set of experiments in which the module is significantly induced (or repressed). Below we list all such annotations that were enriched in this module with an FDR corrected p-value of 0.05 ('P-value' column), along with the number ('Hits' column) of induced (or repressed) experiments in which they appear. We also show the fraction of experiments with the given annotation that are included in this module ('Hits (%)' column). Rows that correspond to annotations that were enriched in the induced experiments of the module have a red background, while rows corresponding to annotations enriched in the repressed experiments have a green background. For each annotation, we also list the other modules in which it was enriched.
Clinical annotation P-value Hits Hits(%) Modules
Macrophages 3.11e-09 11 40.740 3 4 8 9 15 16 17 18 21 22 28 31 32 36 37 39 42 48 50 52 53 54 56 57 61 62 69 72 73 74 77 82 83 86 87 91 95 98 102 105 108 114 116 118 119 123 124 125 126 136 143 144 145 150 151 152 158 159 161 163 167 169 171 177 179 188 197 198 208 210 212 219 223 226 233 237 238 239 243 244 252 254 255 263 264 265 273 275 278 280 281 289 292 293 300 301 302 303 307 308 312 315 317 319 320 321 323 332 337 344 345 346 352 361 363 367 371 375 376 378 397 399 403 405 412 414 427 436 438 450 451 456 459 479 485 488 491 494 518 522 532 537 538 550 562 568 574
Salmonella 8.57e-07 6 25 3 4 6 8 9 15 16 17 18 22 27 28 32 39 42 44 45 46 48 50 52 53 62 64 73 74 75 76 77 79 82 83 84 86 87 91 92 95 98 108 114 116 118 121 123 126 128 151 152 159 163 165 169 170 177 197 198 212 223 233 239 243 252 263 264 265 273 275 280 281 307 309 319 323 346 352 363 370 371 395 414 479 488 491 494 518 537 550 562 568 574
Live bacteria 2.68e-06 6 25 3 4 6 8 9 15 16 17 18 22 27 28 32 39 42 44 46 48 50 52 53 62 64 73 74 75 76 77 79 82 83 84 86 87 91 95 98 108 114 116 118 121 123 126 151 152 159 163 165 169 177 197 198 212 223 226 243 254 263 264 265 273 275 280 281 307 309 311 312 319 323 336 346 352 363 371 414 449 456 477 479 488 491 494 518 537 550 554 562 568 574
Unstimulated immune cells 1.10e-05 7 25.925 16 27 31 37 61 69 73 84 87 114 121 123 126 128 134 136 151 169 170 171 179 197 223 254 255 263 265 288 292 300 303 308 312 317 319 345 369 375 378 399 405 412 433 436 439 456 459 488 491 521 522 532 537 538 550 568
Macrophages 3.71e-05 7 29.166 3 4 8 9 15 16 17 18 21 22 28 31 32 36 37 39 42 48 50 52 53 54 56 57 61 62 69 72 73 74 77 82 83 86 87 91 95 98 102 105 108 114 116 118 119 123 124 125 126 136 143 144 145 150 151 152 158 159 161 163 167 169 171 177 179 188 197 198 208 210 212 219 223 226 233 237 238 239 243 244 252 254 255 263 264 265 273 275 278 280 281 289 292 293 300 301 302 303 307 308 312 315 317 319 320 321 323 332 337 344 345 346 352 361 363 367 371 375 376 378 397 399 403 405 412 414 427 436 438 450 451 456 459 479 485 488 491 494 518 522 532 537 538 550 562 568 574
phoP mut Salmonella 0.00013 3 12.5 32 83 86 87 123 150 159 177 197 264 273 280 319 321 323 346 363 479 491 550 568
HBV infected 0.00021 8 33.333 1 2 5 6 8 9 10 11 12 15 17 18 19 23 24 27 33 34 38 40 41 43 44 45 46 47 48 49 52 53 54 55 57 58 60 63 64 66 67 73 75 76 78 84 85 88 92 93 94 95 96 98 99 100 101 106 107 108 109 112 117 118 121 123 125 129 130 131 132 134 135 137 140 144 146 154 158 163 164 165 172 176 180 184 185 190 191 193 197 198 199 205 207 209 212 213 221 223 227 234 235 239 247 248 249 251 252 257 259 262 263 265 276 286 287 288 289 292 293 294 295 297 305 306 309 310 319 320 324 327 337 342 343 345 349 353 354 357 364 367 370 372 373 375 385 386 397 401 404 406 410 415 417 422 423 424 426 432 434 436 440 445 452 458 461 468 469 474 477 478 479 481 485 486 495 496 505 506 507 510 514 515 523 529 530 536 544 545 546 553 566
Liver non-tumor 0.00021 6 25 1 2 5 6 8 9 10 11 12 15 18 19 23 24 26 27 33 34 38 40 41 43 44 45 46 47 48 49 53 54 55 57 58 60 63 64 66 73 75 76 78 79 84 85 88 92 93 94 95 96 98 99 100 101 106 107 108 109 112 117 118 121 122 123 124 125 128 129 130 131 132 134 135 137 140 146 154 158 162 163 164 165 170 171 172 176 180 184 185 190 191 193 197 198 199 205 207 208 209 212 213 220 221 223 225 227 234 235 236 238 239 241 244 247 248 249 252 253 257 259 262 263 265 276 283 286 287 288 289 292 294 295 297 301 302 305 306 309 310 315 319 320 321 324 327 335 337 342 343 345 349 353 354 357 364 370 372 373 375 385 397 401 403 404 405 410 415 417 422 423 424 426 431 434 436 437 440 445 452 456 458 461 468 469 470 474 478 479 481 484 485 486 494 495 496 505 506 521 523 528 529 536 544 545 546 556 566
Hepatitis infected 0.00033 8 33.333 1 2 5 6 8 9 10 11 12 15 17 19 23 24 27 33 34 38 40 41 43 44 45 46 47 48 49 52 53 54 55 57 58 60 63 64 66 67 73 75 76 78 79 84 85 88 92 93 94 95 96 98 99 100 101 106 107 108 109 112 117 118 121 123 125 128 129 130 131 132 134 135 137 140 144 146 154 158 163 164 165 170 171 172 176 180 184 185 190 191 193 197 198 199 205 207 208 209 212 213 221 223 227 234 235 239 247 248 249 251 252 257 259 262 263 265 276 286 287 288 289 292 293 294 295 297 305 306 309 310 319 320 324 327 337 342 343 345 349 353 354 357 364 367 370 372 373 375 385 386 397 401 404 406 410 415 417 422 423 424 426 434 436 440 445 452 458 461 468 469 474 477 478 479 481 485 486 495 496 505 506 507 510 514 515 523 529 530 536 544 545 546 553 564 566


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Enriched GO annotations
For each GO annotation, we tested whether it was enriched in the set of genes of the module. Below we list all such annotations that were enriched in this module with an FDR corrected p-value of 0.05 ('P-value' column), along with the number ('Hits' column) of genes in which they appear. We also show the fraction of genes with the given GO annotation that are included in this module ('Hits (%)' column).


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Visual display
Below is a visual display of the module. Shown are those arrays in which the module's genes significantly change, and the direction of change (induction/repression) in each array is indicated (middle, labeled 'Module changes'; red/green row). The arrays that correspond to the significant clinical attributes are also shown (top; brown rows). The gene sets that compose the module are also shown (left) along with an indication of the membership of the module genes in these gene sets.
You can also view the images within GeneXPress by loading the module gxp file file.
 
 





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