Module 50

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General Properties
Below we list the number of gene sets from which the module was composed was originally composed, and the number of genes and experiments that it contains. Clicking on the number of genes will display a detailed list of all the genes in the module. Clicking on the number of experiments will display a detailed list of all the experiments in the module.
Num gene sets: 2
Num genes: 13 (see 1962 additional genes for this module)
Num experiments: 80 (32 induced, 48 repressed)
Parent module: 91
Children modules: None


Jump to: Home | General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Gene sets
Below we list the gene sets from which the module was originally composed. Clicking on a gene set will display all the genes associated with that gene set. Also listed are all the other modules in which the gene set participates.
proteasome endopeptidase activity
proteasome core complex (sensu Eukarya)


Jump to: Home | General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Enriched clinical annotations
For each of the clinical annotations, we tested whether it was enriched in the set of arrays in which the module is significantly induced (or repressed). Below we list all such annotations that were enriched in this module with an FDR corrected p-value of 0.05 ('P-value' column), along with the number ('Hits' column) of induced (or repressed) module's arrays in which they appear. We also show the fraction of the module's induced (or repressed) arrays with the given annotation ('Hits (%)' column). For completeness, we also list the total number of relevant induced arrays in the module ('Module hits in category' column), total number of arrays in the compendium in which the corresponding annotation is present ('Arrays in annotation' column), and the total number of relevant arrays in the compendium ('Arrays' column). Note that the 'relevant' arrays may be different for each annotation, since it includes only arrays in which the annotation was relevant (i.e., present or not present) and excludes arrays where the value of the annotation was not known. Rows that correspond to annotations that were enriched in the induced arrays of the module have a red background, while rows corresponding to annotations enriched in the repressed arrays have a green background. For each annotation, we also list the other modules in which it was enriched.
Clinical annotation Category P-value Hits Hits(%) Module hits in category Arrays in annotation Arrays
Hematologic cancer and cell line (Stimulated immune*) Stimulated immune* 1.5e-09 12 25 48 53 1945
Hematologic samples and cell lines (Stimulated immune*) Stimulated immune* 1.5e-09 12 25 48 53 1945
Macrophages (Stimulated immune*) Stimulated immune* 1.5e-09 12 25 48 53 1945
Monocytes (Stimulated immune*) Stimulated immune* 1.5e-09 12 25 48 53 1945
Atypical teratoid/rhabdoid tumour - CNS and other origin (Neuro tumors) Neuro tumors 8.6e-06 6 75 8 10 90
Cancer and cell line (Neuro tumors*) Neuro tumors* 4.6e-05 8 25 32 86 1945
Cancer (Neuro tumors*) Neuro tumors* 4.6e-05 8 25 32 86 1945
CNS cancer or cell line (Neuro tumors*) Neuro tumors* 0.0001 9 18.7 48 81 1945
CNS tumor (Neuro tumors*) Neuro tumors* 0.0001 9 18.7 48 81 1945
Prostate (Prostate cancer*) Prostate cancer* 0.0001 10 20.8 48 101 1945
Renal cancer or cell line (Neuro tumors) Neuro tumors 0.0001 4 50 8 5 90
Renal tissue (Neuro tumors) Neuro tumors 0.0001 4 50 8 5 90
CNS tissue, cancer or cell line (Neuro tumors*) Neuro tumors* 0.0001 9 18.7 48 85 1945
Hematologic cancer and cell line (Stimulated immune*) Stimulated immune* 0.0001 6 18.7 32 53 1945
Hematologic samples and cell lines (Stimulated immune*) Stimulated immune* 0.0001 6 18.7 32 53 1945
Macrophages (Stimulated immune*) Stimulated immune* 0.0001 6 18.7 32 53 1945
Monocytes (Stimulated immune*) Stimulated immune* 0.0001 6 18.7 32 53 1945
Cancer and cell line (Neuro tumors*) Neuro tumors* 0.0001 9 18.7 48 86 1945
Cancer (Neuro tumors*) Neuro tumors* 0.0001 9 18.7 48 86 1945
Cancer and cell line (Various tumors*) Various tumors* 0.0001 8 25 32 105 1945
Cancer (Various tumors*) Various tumors* 0.0001 8 25 32 105 1945


Jump to: Home | General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Enriched GO annotations
For each GO annotation, we tested whether it was enriched in the set of genes of the module. Below we list all such annotations that were enriched in this module with an FDR corrected p-value of 0.05 ('P-value' column), along with the number ('Hits' column) of the module's genes in which they appear. We also show the fraction of the module's genes with the given GO annotation that are included in this module ('Hits (%)' column). For completeness, we also list the total number of genes in the module ('Module genes' column), total number of genes in the compendium in which the corresponding annotation is present ('Genes in annotation' column), and the total number of genes in the compendium ('Genes' column).
GO annotation P-value Hits Hits(%) Module genes Genes in annotation Genes
proteasome endopeptidase activity 2.3e-37 13 100 13 14 4566
proteasome core complex (sensu Eukarya) 1.7e-36 13 100 13 15 4566
proteasome complex (sensu Eukarya) 3.4e-33 13 100 13 21 4566
26S proteasome 6.3e-31 13 100 13 28 4566
ubiquitin-dependent protein catabolism 5.8e-30 13 100 13 32 4566
serine-type peptidase activity 5.3e-24 13 100 13 80 4566
endopeptidase activity 1.0e-22 13 100 13 99 4566
endoplasmic reticulum 3.3e-20 13 100 13 151 4566
peptidase activity 9.2e-19 13 100 13 193 4566
ribosome 9.9e-19 13 100 13 194 4566
protein modification 8.6e-17 13 100 13 271 4566
ribonucleoprotein complex 1.5e-16 13 100 13 283 4566
hydrolase activity 1.0e-10 13 100 13 783 4566
nucleus 1.5e-09 13 100 13 966 4566
obsolete 2.1e-09 13 100 13 990 4566
catalytic activity 2.1e-06 13 100 13 1677 4566


Jump to: Home | General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Visual display
Below is a visual display of the module. Shown are those arrays in which the module's genes significantly change, and the direction of change (induction/repression) in each array is indicated (middle, labeled 'Module changes'; red/green row). The arrays that correspond to the significant clinical attributes are also shown (top; brown rows). The gene sets that compose the module are also shown (left) along with an indication of the membership of the module genes in these gene sets.
You can also view the images within GeneXPress by loading the module gxp file file.
 
 





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