# Adam Sadovsky
# 06/23/05

CXX = g++
CPPFLAGS = -O3 -Wall
# CPPFLAGS = -ggdb
LDFLAGS = 

PROG = findmotifs
PROG_OBJS = findmotifs.o graph.o ConfigFile.o

TAR_OBJS = findmotifs.pl \
findmotifs.cpp ConfigFile.cpp ConfigFile.h graph.cpp graph.h Makefile


all : $(PROG)

$(PROG) : $(PROG_OBJS)
	$(CXX) -o $@ $(PROG_OBJS) $(LDFLAGS)

ConfigFile.o : ConfigFile.cpp ConfigFile.h
	$(CXX) -c ConfigFile.cpp $(CPPFLAGS)

graph.o : graph.cpp graph.h ConfigFile.h
	$(CXX) -c graph.cpp $(CPPFLAGS)

findmotifs.o : findmotifs.cpp graph.h
	$(CXX) -c findmotifs.cpp $(CPPFLAGS)


clean :
	\rm -f $(PROG) $(PROG_OBJS)

tar :
	tar -cf - $(TAR_OBJS) | gzip -c > $(PROG).tar.gz