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/EE)EE]EE$EEu $` EUEEEMEEE)É؉EEEEEE$iEEEu $ QEEE EEEEEE EEEE)É؉EEEEs Ee] Ee]E]E( ]Eu]EE]EeEwEeEwxEesEٝttU E]E]9EEs Ee] Ee]E]E( ]EEs EE]LE]Es E]#EݝhhlEUEE]E]E$E]EEsHEEsEEEEEEEEEEEȉEċẺEȋEEEEwEEEEEEsEEztEEEEEȉEċEE=EEs$EEztEEzt EEEEăE}dr$ UEE]EÐU(@\D$$EE:EME¡D\E¡H\ME@\9E|L\E$]@\D$D$E$6EEEÐUXE$E ЋEE $E ЋEEEw4EEE EU EEEEEUEE E E0 ]E܋EE$E ЋE_E EEE]E EEE]E ]E EME EM]EeseEeT\<X\T\X\wT\]E%EX\]E%EE]gEeT\<X\T\X\wT\]E%EX\]E%EE8 ]Eum]E EE @ ]E eEEwE$E ]EEw)E EU EEEUEEEwUEUEtEEE 0 ]E$E ]EeEewvE$E ]EEwEE UEEEE 0 ]EEUEE$E ]aEeEEsEEE$E ],EEE 0 ]E$E ]E EEE UEEEEEUEEEUE~ \E؅ EEڋEE'EE_ NE )ȉEEEi)iЧAEi )‹EEyEE}EU`\m}s`\\EE_ NE )ȉEEEi)iЧAEi )‹EEyEE\EE`\\UE`\\P$d$H ]EP t X ]E]EÐU]Ít&'UWVS^ucOE)E}Ut+1ƍED$E D$E$9}u߃[^_]Ë$ÐUSHXHXt Ћu[]US[bY[Hz> concat n_fields2=to n_fields=Read list of papers /Projects/TimeCourses/Runs/papers.lst/Data/Expression/Yeast/Compendium/data.tab Read Expression from Read genes. fields1. Total fields. padded.tab Read Expression from new fields1. Total after concatenation: theta=[ h0= h1= h2= t1= t2= beta=] b1= b2= h3= h4= t3= t4= ج ج جimpulse.cpp: Illegal model = '' N_MODEL_PARMS = "^^.:FR Spheric mode Not implemented yet General mode Not implemented yet@PERT!@Illegal mode = . AQ?{Gz?{Gz@?-C6?Q?@Q?{Gz?{Gz@?-C6???333333?@?{Gz?{Gz@?-C6?Q?@Q?{Gz?{Gz@?-C6?Q?{Gz?{Gz@?-C6?Q?@Q?{Gz?{Gz@?-C6?Q?@Q?{Gz?{Gz@?-C6?Q?@Q?{Gz?{Gz?-C6?im::cg_fit_single_nr: Illegal model = :[|cvtheta=zeros(,); n_valid=; full_xsfull_ys) cvtheta=[]; secs; cverr()=;cvtheta(,:)=[]; {Gz?{Gzn_shuffles=rthetas=zeros(rerr=zeros(,1); rerr() = rthetas(];%ok=1; @@@@mWrerr=[pval=NaN; n_better_random=NaN; rthetas=[tmppval=n_better_random=pval=segs_indssegs_lagsn valid global_xsglobal_ysSKIP: Only valid measurments. err= theta=[]err(smooth(n_valid(theta{} = [SingleGenesFit/model/ThetaStats/seg_priors.txt_covars.txt_means.txtmodel/FillMiss/seg/seg__cvfil.mmodel/Pvals/seg_pval.mmodel/Stability_stab.mmodel/Fit/seg_fit.m./Outputvector::_M_insert_auxRead Data from '' Read Mask from Read Time from inconsistent input: #time points in Expression data (n_fileds_from_user) = #time lags in '' = Not enough input arguments: Use -h for instructions. mode= dataset= n_fields_from_user= force= n_genes_from_user= read_genes_list= genes_filename_from_user= n_Shuffles= model=Illegal model code n_genes_from= n_genes_to= data_tab_filename_from_user= time_tab_filename_from_user= mask_tab_filename_from_user= Unknown option - 'This binary fits an impulse model to time course. Gal Chechik (C) 2003-2008 The model used here adds three pseudo measurements with zero values at times [-30,-20,-10] Options: -h = this help -d = output directory name. default = 'Output'. -E filename = tab delimited file with expression data -T filename = tab delimited file with measurments times -M filename = tab delimited file wirth mask of missing values -G value = number of genes -F value = number of fields per gene Examples: im -E express.tab -T timing.tab -G 1000 -F 6 -M mask.tab \WX]]]]mY]]]]]]]@]]]]]]]]]]]]]]]VDW]cX]4^]]]ZZZ[]]]]]!\%s/%04d_cv_fit_pval_stabIllegal mode .m n_fields_from_user = n_fields (timing)= n_genes_from_user = n_genes_from = n_genes_to = n_genes = ===>num_extra_zeros = Loop - mode = Skip gene since file exists ========================================== gene= file=Fit for gene= filename=Pval for gene=Stability for gene CV for gene =[ ]; Open for writing file_open: An error occured in File. file_open: File could not be opened HOSTNAMEFailed to get $HOSTNAMEHOMEFailed to get $HOME/** An error occured. File ** File does not ontain any data failed malloc for col Illegal no of header lines Programmers error - not enough lines(?) : not found. IntFromString:Non-Numeric valuevector::_M_insert_auxread_string_vector: An error occured. File** read_string_vector: File read_double_vector: An error occured. File** read_double_vector: File read_int_vector: An error occured. File** read_int_vector: File read_float_vector: An error occured. File** read_float_vector: File FloatFromString: Non-Numeric value '' .Programmers error wwrite_bool_mat_bin: An error occured. Filewrite_float_mat_bin: An error occured. Filerread_bool_mat_bin: An error occured. Fileread_float_mat_bin: An error occured. File read_bool_mat: An error occured. File %dread_int_mat: An error occured. File %gread_double_mat: An error occured. File read_float_mat: An error occured. File read_float_vec: An error occured. 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