Local ancestry inference
ALLOY is a fast and accurate method for local ancestry inference, which is the problem of labeling each position of the genome with an ancestral origin.
We have developed PARENTE and PARENTE2, fast and accurate methods for detecting IBD in increasingly large cohorts.
, S. Bercovici*, M. Elmore, S. Batzoglou.Journal of Computational Biology, 20.3 (2013): 199-211.
S. Bercovici*, , M. Elmore, S. Batzoglou.Proceedings of the Sixteenth Annual Conference on Research in Computational Molecular Biology (RECOMB 2012), pp 12-28.
, N. Gupta, R. D. Smith, and P. A. Pevzner.Journal of Proteome Research, 1:300-305, 2008.
Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes.N. Gupta, ..., , ..., V. Bafna, R. D. Smith, and P. A. Pevzner.Genome Research, 2008.
Automatic detection of metastatic cancer cells in the blood., A. Powell, S. Jeffrey, S. Batzoglou, and D. Paik.ISMB, 2010.
GEDI: A sensitive method for detecting insertions and deletions with paired-end sequencing., S. Kyriazopoulou-Panagiotopoulou, S. D. Guo, D. E. Newburger, and S. Batzoglou.RECOMB, 2010. Presented by S. Kyriazopoulou-Panagiotopoulou.
Does Trypsin Cut Before Proline?, N. Gupta, and P. A. Pevzner.55th ASMS Conference on Mass Spectrometry, 2007.
Evidence for siRNA silencing as a mode of regulation of cis-antisense overlapping genes.and J. Kuhn.Algorithmic Biology Conference, 2006.
Bioinformatics and Microarray Analysis of Hormone Responses in Arabidopsis..Nineteenth Annual UCSD Undergraduate Research Conference, 2006.
- 2013 Ph.D. from Stanford in Biomedical Informatics.
- 2010 M.S. from Stanford in Biomedical Informatics.
- 2007 B.S. from UCSD in Computer Science with a Specialization in Bioinformatics.