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Daphne Koller Publications
Research Areas (all)Publication TypeYears (all)
BMBiology and Medicine   LGMLearning Graphical Models
RPMRicher Probabilistic Models  
JJournal Article
CConference Paper
BBook
ChBook Chapter
TTechnical Report
PhDPhD Disseration
1985 - 1989
1990 - 1994
1995 - 1999
2000 - 2004
2005 - 2009
2010 - 2014

TypeReferenceDownload
topics: BMLGMRPM

2004
J   E. Segal, N. Friedman, D. Koller, and A. Regev (2004). "A Module Map Showing Conditional Activity of Expression Modules in Cancer." Nature Genetics, 36(3), 1090-1098. bib/abs pdf
topics: BM      

C   A.J. Battle, E. Segal, and D. Koller (2004). "Probabilistic Discovery of Overlapping Cell Processes and Their Regulation." Eight Annual International Conference on Research in Computational Molecular Biology (RECOMB). bib/abs pdf ps.gz
topics: BM LGM   

J   R.M. Marion, A. Regev, E. Segal, Y. Barash, D. Koller, N. Friedman, and E. O'Shea (2004). "Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression." Proc. National Academcy of Sciences USA, 101, 14315-22. bib/abs pdf
topics: BM      

J   L. Getoor, J. Rhee, D. Koller, and P. Small (2004). "Understanding Tuberculosis Epidemiology using Probabilistic Relational Models." Journal of Artificial Intelligence in Medicine, 30, 233-256. bib
topics: BM    RPM

C   E. Segal, R. Yelensky, A. Kaushal, T. Pham, A. Regev, D. Koller, and N. Friedman (2004). "GeneXPress: A Visualization and Statistical Analysis Tool for Gene Expression and Sequence Data." Proceedings of the 11th International Conference on Intelligent Systems for Molecular Biology (ISMB). bib/abs pdf ps.gz
topics: BM      

2003
J   J. Stuart, E. Segal, D. Koller, and S. Kim (2003). "A Gene Co-Expression Network for Global Discovery of Conserved Genetic Modules." Science, 302(5643), 249-55. bib/abs pdf
topics: BM      

J   E. Segal, M. Shapira, A. Regev, D. Pe'er, D. Botstein, D. Koller, and N. Friedman (2003). "Module Networks: Identifying Regulatory Modules and Their Condition-Specific Regulators from Gene Expression Data." Nature Genetics, 34(2), 166-176. bib/abs pdf
topics: BM      

C   E. Segal, A.J. Battle, and D. Koller (2003). "Decomposing gene expression into cellular processes." Proc. Pacific Symposium on Biocomputing (PSB) (pp. 89-100). bib/abs pdf ps.gz
topics: BM    RPM

C   E. Segal, D. Pe'er, A. Regev, D. Koller, and N. Friedman (2003). "Learning Module Networks." Proc. Nineteenth Conference on Uncertainty in Artificial Intelligence (UAI) (pp. 525-534). [newer version, 2005]bib/abs pdf
topics: BM LGM RPM

J   E. Segal, R. Yelensky, and D. Koller (2003). "Genome-wide Discovery of Transcriptional Modules from DNA Sequence and Gene Expression." Bioinformatics, 19(S1 (Proc. ISMB)), 1273-82. Winner of the ISMB Best Paper Award. bib/abs pdf ps.gz
topics: BM    RPM

J   E. Segal, H. Wang, and D. Koller (2003). "Discovering Molecular Pathways from Protein Interaction and Gene Expression data." Bioinformatics, 19(S1 (Proc ISMB)). Winner of the ISMB Best Student Paper Award. bib/abs pdf ps.gz
topics: BM    RPM

2002
C   E. Segal, Y. Barash, I. Simon, N. Friedman, and D. Koller (2002). "From Promoter Sequence to Expression: A Probabilistic Framework." Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB) (pp. 263-272). bib
topics: BM    RPM

2001
J   E. Segal, B. Taskar, A. Gasch, N. Friedman, and D. Koller (2001). "Rich probabilistic models for gene expression." Bioinformatics, 17(Suppl 1), S243-52. Proc. ISMB 2001. bib/abs pdf ps.gz
topics: BM    RPM

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