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About me | Research | Publications | Teaching |
Claassen M, "Inference and Validation of Protein Identifications", Molecular & Cellular Proteomics, 2012
Walzthoeni T, Claassen M, Leitner A, Herzog F, Bohn S, Förster F, Beck M, Aebersold R, "False Discovery Rate Estimation for Cross-Linked Peptides Identified by MS", Nature Methods, 2012
Claassen M, Reiter L, Hengartner MO, Buhmann JM, Aebersold R, "Generic Comparison of Protein Inference Engines", Molecular Cellular Proteomics, 2011
Ludwig C, Claassen M, Schmidt A, Aebersold R, "Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry", Molecular Cellular Proteomics, 2011
Beck M, Schmidt A, Malmstrom J, Claassen M , Ori A , Szymborska A, Herzog F, Rinner O, Ellenberg J, Aebersold R, "The quantitative proteome of a human cell line", Molecular Systems Biology, 2011
Schmidt A, Beck M, Malmstrom J, Lam HHN, Claassen M, Campbell D, Aebersold R, "Absolute quantification of microbial proteomes at different states by directed mass spectrometry", Molecular Systems Biology, 2011
Beck M, Claassen M, Aebersold R, "Comprehensive proteomics", Current Opinion in Biotechnology, 2010Claassen M, Reiter L, Hengartner MO, Buhmann JM, Aebersold R, "Generic Comparison of Protein Inference Engine Families", RECOMB Satellite Conference on Computational Proteomics, 2010
Claassen M, Aebersold R, Buhmann JM, "Proteome Coverage Prediction for Integrated Proteomics Datasets", RECOMB, Journal of Computational Biology, 2010
Claassen M, Aebersold R, Buhmann JM, "Proteome Coverage Prediction with Infinite Markov Models", Bioinformatics, 2009
Best Paper Award, ISMB 2009
Schmidt A, Claassen M, Aebersold R, "Directed mass spectrometry: towards hypothesis-driven proteomics", Curr Opin Chem Biol, 2009
Reiter L, Claassen M, Schrimpf SP, Jovanovic M, Schmidt A, Buhmann JM, Hengartner MO, Aebersold R, "Protein identification false discovery rates for very large proteomics datasets generated by tandem mass spectrometry", Molecular Cellular Proteomics, 2009
Claassen M, "Design and Validation of Proteome Measurements", PhD Thesis, ETH Zurich, 2010
Claassen M, "Structure based prediction of binding affinities of class I MHC ligands", Diploma Thesis (Computer Science), University Tübingen, 2006
Claassen M, "Molecular Modelling of Peptide Ligands in HLA-A*0201 Complexes", Diploma Thesis (Biochemistry), University Tübingen, 2004