#directory in which the input maps and other needed files are stored 
workdir ./

#Map 1
closedconf phage-avg-norm.cr0.01.xplor 

#Map 2
openconf procapsid-avg-norm.cr0.01.xplor 

#for Map 1: this is a density threshold value, below which you think the density value is pretty much noise
zero_thresh_c 0.01

#for Map 2: this is a density threshold value, below which you think the density value is pretty much noise
zero_thresh_o 0.01

#leave as default for now
kp_div_c 1
kp_div_o 2

#leave as default for now
kpc_compare_res 1