MDscan Search
Please don't submit more than one job at a time!!
Submit another job only if one of the following is true:
1. You have received answer from your previous submission.
2. Your previous job was submitted more than one day ago.
User information
Please specify your email so we can send the search result to you
Run information
Please specify a run name (will be included in the result email)
Input Sequences
You can either specify a file
Or paste your sequences below:
Background Model
You can use the input sequence as background if you don't specify any of the following.
Or you can specify a background sequence file
Or paste background sequences below:
Or use the precomputed genome background model
V. cholerae intergenic
E. coli genome
E. coli intergenic
C. elegans intergenic
Human 1000bp upstream
Human 5000bgp upstream
Mouse 1000 bp upstream
Mouse 5000bp upstream
N. crassa 1000bp upstream
B. subtilis intergenic
M. tuberculosis genome
M. xanthus genome
S. cerevisiae genome
S. cerevisiae intergenic
Motif Model
Motif width
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Number of top sequences to look for candidate motifs
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Number of candidate motifs for scanning the rest sequences
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Report the top final
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motifs found