| activate() | PAtom | [inline] |
| ApplyTransform(const Matrix4 &transform) | PAtom | |
| changePosition(const Vector3 &newPosition) | PAtom | |
| FindAnyCollision() const | PAtom | |
| FindSelfCollision() const | PAtom | |
| FindStaticCollision() const | PAtom | |
| getAllCollidingEither() const | PAtom | |
| getAllCollidingSelf() const | PAtom | |
| getAllCollidingStatic() const | PAtom | |
| getBond(PResidue *res, const string &id) | PAtom | |
| getBonds() const | PAtom | [inline] |
| getChain() const | PAtom | |
| getColor() const | PAtom | [inline] |
| getCovalentRadius() const | PAtom | [inline] |
| getGridPos() const | PAtom | |
| getID() const | PAtom | [inline] |
| getName() const | PAtom | [inline] |
| getOccupancy() const | PAtom | [inline] |
| getParentBlock() | PAtom | [inline] |
| getParentResidue() | PAtom | |
| getPos() const | PAtom | [inline] |
| getSpaceManager() const | PAtom | |
| getTempFactor() const | PAtom | [inline] |
| getVanDerWaalsRadius() const | PAtom | [inline] |
| inactivate() | PAtom | [inline] |
| InAnyCollision() const | PAtom | |
| InSelfCollision() const | PAtom | |
| InStaticCollision() const | PAtom | |
| isActive() const | PAtom | [inline] |
| isBonded(const PAtom *other) const | PAtom | |
| isOnBackbone() const | PAtom | |
| PAtom(PBlock *block, const string &name, Vector3 position, const string &id) | PAtom | |
| PBlock class | PAtom | [friend] |
| PBond class | PAtom | [friend] |
| PResidue class | PAtom | [friend] |
| revertColor() | PAtom | [inline] |
| setColor(const GLColor setColor) | PAtom | [inline] |
| setOccupancy(Real newVal) | PAtom | [inline] |
| setTempFactor(Real newVal) | PAtom | [inline] |
| shortestBondPath(const PAtom *a1, const PAtom *a2, int threshold=-1) | PAtom | [static] |
| traverseAtoms(AtomFunctor *atomFn) | PAtom | [inline] |
| traverseBonds(BondFunctor *bondFn) | PAtom | [inline] |
| traverseChain(AtomFunctor *atomFn, BondFunctor *bondFn) | PAtom | |
| WithinActiveBlock() const | PAtom | |
| ~PAtom() | PAtom |
1.5.1