Typhon: A Multiple Alignment Indexing Tool

Welcome to the Typhon homepage. Typhon is an algorithm for building an index from a multiple alignment for use in seeding local alignments to a query sequence. At this site you will find source code for Typhon as well as the Typhon user manual.

Download Typhon
Typhon Paper | High Res (~3 MB)
Typhon Poster (~3 MB) | High Res (~42 MB)
Typhon user manual
Command quick reference
Supplementary Results