PBlockConnection Class Reference

#include <PBlockConnection.h>

List of all members.

---

Detailed Description

PBlockConnection is used to specify and create connections between blocks. A pair of blocks (such as backbone and sidechain) can form a simple residue, or they can be connected to additional blocks (e.g. to include oxygen atoms or hydrogen atoms).

Public Member Functions
	PBlockConnection (const string &definedBlock, const string &blockToDefine, const HASH_MAP_STRPAIR_EX(Vector3)&relativePositions, const vector< PBlockBondShell > &blockConnections)
void	GenerateNewBlock (PBlock *blockDefined, PBlock *incompleteBlock)
void	BondBlocksTogether (PBlock *blockDefined, PBlock *blockJustDefined)
StringPair	getName () const

---

Constructor & Destructor Documentation

PBlockConnection::PBlockConnection	(	const string &	definedBlock,
		const string &	blockToDefine,
		const HASH_MAP_STRPAIR_EX(Vector3)&	relativePositions,
		const vector< PBlockBondShell > &	blockConnections
	)

Constructs a new PBlockConnection. Required are: the string ID of the defined block and block being defined; the map of relative positions, as defined in doc/FORMATS; and the vector of block connections specifying which atoms form inter-block bonds.

---

Member Function Documentation

void PBlockConnection::GenerateNewBlock	(	PBlock *	blockDefined,
		PBlock *	incompleteBlock
	)

NewBlock is generated by using the map of relative positions, as defined in doc/FORMATS; and the vector of block connections specifying which atoms form inter-block bonds.

void PBlockConnection::BondBlocksTogether	(	PBlock *	blockDefined,
		PBlock *	blockJustDefined
	)

Bonds the newly generated block with correct global positions.

StringPair PBlockConnection::getName

(

)

const [inline]

Returns the StringPair of the defined block and todefine block.

---

The documentation for this class was generated from the following files:

• src/core/PBlockConnection.h
• src/core/PBlockConnection.cc

---