PDBIO Class Reference

#include <PExtension.h>

List of all members.

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Detailed Description

Contains methods to read PChains from a PDB file and write them back out in PDB format. See the PDB homepage for more information.

Static Public Member Functions
static PProtein *	readFromFile (const string &fileName)
static void	writeToFile (PChain *chain, const string &fileName, const string &prefix="")
static bool	isCyclicPDB (const string &fileName)
static vector< string >	getAllAtomLines (const vector< string > &pdbLines)
static pdbAtomLine	parseAtomLine (const string &line)
Friends
class	CS2IO
Classes
struct	pdbAtomLine

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Member Function Documentation

PProtein * PDBIO::readFromFile

(

const string &

fileName

)

[static]

Reads the specified PDB file and returns the contents as a PProtein pointer, or NULL if an I/O error is encountered.

void PDBIO::writeToFile	(	PChain *	chain,
		const string &	fileName,
		const string &	prefix = ""
	)			[static]

Writes the specified PChain chain to a file named fileName, using the standard PDB format. Optionally, a prefix may be appended to each line of output.

bool PDBIO::isCyclicPDB

(

const string &

fileName

)

[static]

Returns true if the PDB file specified by fileName appears to represent a cyclic protein, false otherwise.

vector< string > PDBIO::getAllAtomLines

(

const vector< string > &

pdbLines

)

[static]

Returns a vector containing all the lines in pdbLines that begin with "ATOM " or "HETATM", up to the "TER" terminating line (if one is present).

PDBIO::pdbAtomLine PDBIO::parseAtomLine

(

const string &

line

)

[static]

Returns a pdbAtomLine structure containing data from the specified line in a PDB file.

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Friends And Related Function Documentation

friend class CS2IO [friend]

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The documentation for this class was generated from the following files:

• src/core/PExtension.h
• src/core/PDBIO.cc

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