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GeneXPress All of the statistical evaluations were done and visualized in GeneXPress, a cluster analysis and visualization tool we developed for this purpose. The tool can evaluate the output of any clustering program for enrichment of gene annotations and motifs and is freely available for academic use. After downloading GeneXPress, you can examine all modules in detail, by opening the full expression compendium in GeneXPress (this file is very heavy and requires machines with 1GB RAM). You can also download the raw expression data in GeneXPress format. We wrote a brief tutorial of GeneXPress for the purpose of this analysis. You can then load the following analysis files: Modules (from paper) Experiment attributes in Excel format or in GeneXPress format Gene Ontology (GO) Kegg pathways GenMapp pathways Expression clusters Tissue specific gene sets