Here is a list of all class members with links to the classes they belong to:
- generateChildren()
: forwardOpenLoopNode
, backwardOpenLoopNode
- GenerateNewBlock()
: PBlockConnection
- generateRamachandran()
: PPhiPsiDistribution
- getAllAtomLines()
: PDBIO
- getAllCollidingEither()
: PAtom
, PResidue
, PChain
, PBlock
, PChain
- getAllCollidingSelf()
: PAtom
, PResidue
, PLightChain
, PBlock
, PChain
- getAllCollidingStatic()
: PResidue
, PBlock
, PChain
, PAtom
, PChain
- getAnchor()
: PBlockReconnector
- GetAnchors()
: PProtein
- getAngle()
: PMath
- getAtom()
: PResidue
, PBond
, PChain
- getAtom1()
: PBond
- getAtom2()
: PBond
- getAtomAtRes()
: PLightChain
, PChain
- getAtomId1()
: PBondShell
- getAtomId2()
: PBondShell
- GetAtomIDMapping()
: PResources
- getAtomNames()
: PResources
- getAtomPos()
: PChain
- getAtomPosition()
: PAtomPositionsSpec
, PResidue
- getAtoms()
: PResidue
, PBlockShell
- GetAtomShell()
: PResources
- GetAttribute()
: PInit
- getBackboneAtomIndex()
: PTools
- GetBBDofs()
: PTools
- getBlockBonds()
: PResidueShell
- GetBlockConnection()
: PResources
- getBlockNames()
: PResources
- getBlocks()
: PResidueShell
- GetBlockShell()
: PResources
- GetBlockTypes()
: PChain
- getBond()
: PAtom
, PChain
, PResidue
- getBonds()
: PBlockShell
, PAtom
- getCellBoundingBox()
: PSpaceManager
, PGrid
- GetCenteringTranslate()
: CenteringGetter
- getChain()
: PAtom
, PBlock
, PResidue
- GetChi()
: PProteinResidue
- GetChiIndex()
: PResources
- getChildDof()
: forwardOpenLoopNode
, backwardOpenLoopNode
- getChildRid()
: forwardOpenLoopNode
, backwardOpenLoopNode
- GetClusters()
: PTools
- getColor()
: PAtomShell
, PAtom
- getConformations()
: PCluster
- getConnectionNames()
: PResources
- getCovalentRadius()
: PAtomShell
, PAtom
- getCovariance()
: PPCA
- getDefaultPositions()
: PBlockShell
- getDefinedAtomId()
: PBlockBondShell
- getDegrees()
: Angle
- getDetached()
: PBlockReconnector
- getDof()
: forwardOpenLoopNode
, backwardOpenLoopNode
- getDOF()
: PResidue
- GetDOFs()
: PChain
- getDOFsForBlock()
: PResidue
- getEigenvector()
: PPCA
- GetEndEffectors()
: PProtein
- GetEpsilonValue()
: PResources
- getGlobalBoundingBox()
: PSpaceManager
, PGrid
- GetGoals()
: PTools
, PCCDSolver
, PTools
- getGridPos()
: PAtom
- getHeadBlock()
: PResidue
- getHeadBlockShell()
: PResidueShell
- getHeadId()
: PResidueShell
- GetHydrogenBonds()
: PHydrogenBondTracker
, PHydrogenBondTrackerObject
- getID()
: PAtom
- getLength()
: PBond
- getLines()
: PUtilities
- getLinesStarting()
: PUtilities
- getMean()
: PPCA
- getName()
: PAtom
, PBlockConnection
- GetName()
: PInit
- getName()
: PResidueShell
, PBlockShell
, PBlock
, PAtomShell
, PResidue
- getNonLoopChains()
: CS2IO
- getNumConformations()
: CS2IO
- getOccupancy()
: PSpaceManager
, PAtom
, PGrid
- getOccupancyNeighborNumber()
: PGrid
- getParent()
: PChain
, PProtein
- getParentBlock()
: PAtom
- getParentResidue()
: PBlock
, PAtom
- getPdbId()
: PResidue
- GetPhi()
: PProteinResidue
- getPhiDistribution()
: PPhiPsiDistribution
- getPos()
: PAtom
- getPrincipalComponent()
: PPCA
- getProbPhiPsi()
: PPhiPsiDistribution
- getProtein()
: PProteinResidue
- GetPsi()
: PProteinResidue
- getPsiDistribution()
: PPhiPsiDistribution
- getRadians()
: Angle
- GetReconnectTransform()
: PBlockReconnector
- GetRepresentativeConformation()
: PCluster
- getResidue()
: PLightChain
, PChain
, PProtein
- getResidueByPdbIndex()
: PProtein
- getResidueGlobalIndex()
: PChain
- getResidueIndex()
: PChain
- getResidueLocalIndex()
: PChain
- getResidueNames()
: PResources
- GetResidueShell()
: PResources
- getResourceName()
: PResidue
- GetRotamer()
: PResources
- GetRotamerSize()
: PResources
- getShortestPath()
: PChain
- getSideLength()
: PGrid
- getSpaceManager()
: PAtom
, PChain
, PBlock
, PResidue
, PLightChain
- getSpec()
: PResidue
- getStartAtomID()
: PResidueShell
- getStaticPortions()
: PConformationSpace
- getSubchainByPdbIndices()
: PProtein
- getTailBlock()
: PResidue
- getTailBlockShell()
: PResidueShell
- getTailId()
: PResidueShell
- getTempFactor()
: PAtom
- getToDefineAtomId()
: PBlockBondShell
- getTokens()
: PUtilities
- getTopLevelChain()
: PChain
- getTopLevelIndices()
: PChain
- getTopLevelProtein()
: PProtein
- getTotalEnergy()
: EnergyCalculator
- getType()
: PBlockShell
, PBlock
- getVanDerWaalsRadius()
: PAtom
, PAtomShell
- gsl_test()
: PTools
Generated on Wed May 16 20:22:10 2007 for LoopTK: Protein Loop Kinematic Toolkit by
1.5.1