Module 476

Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
General Properties
Below we list the number of gene sets from which the module was composed was originally composed, and the number of genes and experiments that it contains. Clicking on the number of genes will display a detailed list of all the genes in the module. Clicking on the number of experiments will display a detailed list of all the experiments in the module.
Num gene sets: 2
Num genes: 15 (see 33 additional genes for this module)
Num experiments: 25 (17 induced, 8 repressed)


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Gene sets
Below we list the gene sets from which the module was originally composed. Clicking on a gene set will display all the genes associated with that gene set. Also listed are all the other modules in which the gene set participates.
metal ion transport 476
Golub99 40 476


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Enriched clinical annotations
For each of the clinical annotations, we tested whether it was enriched in the set of experiments in which the module is significantly induced (or repressed). Below we list all such annotations that were enriched in this module with an FDR corrected p-value of 0.05 ('P-value' column), along with the number ('Hits' column) of induced (or repressed) experiments in which they appear. We also show the fraction of experiments with the given annotation that are included in this module ('Hits (%)' column). Rows that correspond to annotations that were enriched in the induced experiments of the module have a red background, while rows corresponding to annotations enriched in the repressed experiments have a green background. For each annotation, we also list the other modules in which it was enriched.
Clinical annotation P-value Hits Hits(%) Modules
Tel/AML1 neg 2.45e-05 3 37.5 1 2 5 6 11 12 19 23 24 27 33 38 45 46 47 51 55 63 64 66 75 76 79 85 88 89 90 92 94 96 99 100 112 117 122 128 129 137 146 168 170 174 176 189 199 203 204 216 220 222 241 247 248 250 259 265 267 287 289 291 316 324 328 331 340 341 372 411 416 421 424 426 433 474 476 549 552
ALL sub class 8.75e-05 3 37.5 1 2 5 6 11 12 19 23 24 27 33 36 38 45 46 47 51 55 60 63 64 66 75 76 79 84 85 88 89 90 92 94 96 99 100 107 108 112 117 121 122 128 129 137 138 146 168 170 174 176 189 199 203 204 216 220 222 241 247 248 250 259 265 267 277 280 287 289 291 316 324 328 331 340 341 372 390 409 410 411 416 421 424 426 433 434 437 440 456 476 534 549 552


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Enriched GO annotations
For each GO annotation, we tested whether it was enriched in the set of genes of the module. Below we list all such annotations that were enriched in this module with an FDR corrected p-value of 0.05 ('P-value' column), along with the number ('Hits' column) of genes in which they appear. We also show the fraction of genes with the given GO annotation that are included in this module ('Hits (%)' column).


Jump to: General properties | Gene sets | Enriched clinical annotations | Enriched Go annotations | Visual display
Visual display
Below is a visual display of the module. Shown are those arrays in which the module's genes significantly change, and the direction of change (induction/repression) in each array is indicated (middle, labeled 'Module changes'; red/green row). The arrays that correspond to the significant clinical attributes are also shown (top; brown rows). The gene sets that compose the module are also shown (left) along with an indication of the membership of the module genes in these gene sets.
You can also view the images within GeneXPress by loading the module gxp file file.
 
 





 >4x